NC_043881.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_043881.1 Siraitia grosvenorii chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158755
Tables: 1
This is table 1 of 1 ( 38 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4301--4344 23 1.9 23 85 0 61 43 18 6 31 1.76
6289--6314 13 2.0 13 100 0 52 23 0 7 69 1.14
9101--9139 19 2.1 19 85 9 53 17 23 0 58 1.38
10974--11001 14 2.0 14 100 0 56 57 0 0 42 0.99
14457--14486 14 2.1 14 100 0 60 26 16 0 56 1.40
30274--30309 17 2.1 17 89 0 54 44 2 13 38 1.59
30638--30684 18 2.7 18 83 3 60 42 21 8 27 1.81
34242--34284 18 2.4 18 92 0 68 46 4 6 41 1.51
34685--34714 15 2.0 15 93 0 51 56 6 23 13 1.60
34708--34752 20 2.2 21 92 4 74 40 11 4 44 1.60
38630--38667 17 2.2 17 95 0 67 57 2 0 39 1.12
38743--38783 16 2.6 16 88 3 57 56 7 0 36 1.27
38816--38887 29 2.5 29 97 0 135 36 20 9 33 1.86
38836--38896 14 4.4 13 76 13 59 34 18 14 32 1.91
38821--38872 15 3.5 15 72 15 54 32 25 7 34 1.84
49610--49662 21 2.5 21 90 6 72 32 11 1 54 1.47
50475--50506 14 2.2 15 94 5 57 25 0 0 75 0.81
53852--53889 15 2.5 15 84 12 51 42 0 2 55 1.14
53851--53895 8 5.6 8 81 7 56 44 0 2 53 1.13
62399--62452 20 2.7 20 100 0 108 44 0 9 46 1.35
62406--62446 11 3.8 11 78 15 50 46 0 9 43 1.36
62399--62450 9 5.3 9 74 17 50 44 0 9 46 1.36
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
62493--62526 12 3.0 12 91 8 54 61 8 0 29 1.26
63735--63766 16 2.0 16 100 0 64 50 6 6 37 1.53
68663--68714 21 2.5 20 79 11 52 46 0 5 48 1.26
73083--73129 23 2.0 23 95 0 67 42 21 17 19 1.89
92371--92453 21 3.7 23 75 18 77 13 22 9 54 1.68
92393--92460 21 3.2 21 82 0 82 11 22 7 58 1.57
94819--94875 18 3.2 18 94 0 105 31 5 28 35 1.79
94819--94875 9 6.3 9 72 0 51 31 5 28 35 1.79
111039--111104 32 2.1 32 97 0 123 40 24 9 25 1.84
117061--117110 20 2.6 19 93 6 91 36 0 0 64 0.94
117105--117141 18 2.1 18 100 0 74 64 0 0 35 0.94
123132--123164 15 2.2 16 89 10 52 36 12 9 42 1.74
135275--135340 32 2.1 32 97 0 123 25 9 24 40 1.84
151504--151560 18 3.2 18 94 0 105 35 28 5 31 1.79
151504--151560 9 6.3 9 72 0 51 35 28 5 31 1.79
153920--154008 21 4.1 21 81 5 81 56 8 22 12 1.64
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Tables: 1
The End!