NC_043882.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_043882.1 Erigeron breviscapus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152357
Tables: 1
This is table 1 of 1 ( 62 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4916--4947 15 2.1 15 94 0 55 50 6 15 28 1.68
6314--6338 12 2.1 12 100 0 50 68 0 16 16 1.22
11788--11845 21 2.7 22 86 5 75 53 8 15 22 1.69
12277--12314 18 2.0 20 90 10 62 60 0 0 39 0.97
12262--12317 20 2.7 20 76 15 60 60 0 3 35 1.14
12351--12393 21 2.0 21 100 0 86 46 9 13 30 1.75
12420--12463 15 2.9 15 86 0 61 75 0 2 22 0.92
25114--25138 12 2.1 12 100 0 50 60 8 8 24 1.52
29903--29935 16 2.1 16 100 0 66 39 0 24 36 1.56
30244--30286 22 2.0 21 95 4 77 51 23 4 20 1.66
30244--30286 21 2.0 22 90 4 70 51 23 4 20 1.66
30942--30993 12 4.2 12 85 9 77 23 17 0 59 1.37
30942--30993 19 2.8 17 76 18 59 23 17 0 59 1.37
31196--31253 27 2.2 26 81 9 64 53 1 1 43 1.21
31203--31414 27 7.6 27 72 18 105 47 0 0 51 1.04
31257--31400 19 7.5 19 76 17 95 45 0 0 53 1.05
31297--31413 4 29.5 4 75 23 90 48 0 0 50 1.06
31816--31855 20 2.0 20 90 0 62 45 20 15 20 1.86
36154--36206 18 3.0 17 81 10 54 41 7 0 50 1.30
36392--36444 27 1.9 26 85 11 70 69 0 1 28 0.99
42463--42506 23 1.9 23 85 0 61 40 9 6 43 1.63
44922--44948 13 2.1 13 100 0 54 29 0 25 44 1.54
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
46954--46992 16 2.4 16 91 0 60 64 0 0 35 0.94
48431--48480 25 2.0 25 100 0 100 32 16 4 48 1.64
48923--48962 13 3.1 13 100 0 80 45 7 7 40 1.61
51067--51097 13 2.5 12 94 5 53 64 0 0 35 0.94
59304--59375 31 2.3 30 80 15 76 50 5 0 44 1.25
59468--59504 18 2.1 18 95 5 67 54 0 10 35 1.36
60874--60939 23 3.0 23 85 14 104 65 0 0 34 0.93
60876--60937 19 3.1 19 90 9 88 64 0 0 35 0.94
61543--61568 13 2.0 13 100 0 52 53 0 7 38 1.30
66604--66629 13 2.0 13 100 0 52 38 0 7 53 1.30
68326--68365 21 1.9 21 89 0 62 32 22 10 35 1.87
72433--72473 12 3.4 12 83 12 57 26 7 0 65 1.18
72536--72589 23 2.5 21 79 8 54 33 9 1 55 1.42
72551--72589 21 1.9 20 89 5 60 30 12 2 53 1.52
77623--77666 10 4.5 10 81 16 56 36 0 0 63 0.95
77620--77661 18 2.3 19 95 4 77 33 0 0 66 0.92
78370--78408 19 2.1 19 100 0 78 35 10 10 43 1.73
82495--82521 11 2.5 11 100 0 54 66 0 0 33 0.92
92106--92180 18 4.4 17 85 8 64 29 8 26 36 1.85
92117--92180 9 7.1 9 70 0 56 29 7 28 34 1.85
92116--92193 18 4.3 18 93 0 129 29 10 26 33 1.89
94735--94775 19 2.2 19 100 0 82 56 4 19 19 1.60
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
95077--95102 13 2.0 13 100 0 52 76 7 7 7 1.15
107512--107575 32 2.0 32 93 0 110 39 26 7 26 1.83
111908--111970 6 10.0 6 75 21 58 31 0 1 66 1.01
111908--111982 10 7.3 10 75 20 66 33 0 1 65 1.01
111908--111983 26 2.9 26 81 11 93 34 0 1 64 1.02
111917--111990 15 5.1 14 76 14 62 36 0 1 62 1.04
112262--112300 19 2.1 19 95 0 69 38 12 0 48 1.42
120327--120386 19 2.9 21 80 12 63 53 1 11 33 1.47
120335--120384 24 2.1 24 82 14 59 52 0 12 36 1.39
120335--120384 26 2.1 22 85 14 64 52 0 12 36 1.39
120327--120385 10 5.4 11 73 18 52 52 1 11 33 1.48
124200--124239 21 1.9 21 89 0 62 45 30 2 22 1.66
129654--129717 32 2.0 32 93 0 110 26 7 26 39 1.83
142127--142152 13 2.0 13 100 0 52 7 7 7 76 1.15
142454--142494 19 2.2 19 100 0 82 19 19 4 56 1.60
145036--145113 18 4.3 18 93 0 129 33 26 10 29 1.89
145036--145113 9 8.7 9 68 0 57 33 26 10 29 1.89
145085--145123 18 2.4 16 87 12 53 41 23 5 30 1.76
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Tables: 1
The End!