NC_044094.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_044094.1 Rosa rugosa chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156999
Tables: 1
This is table 1 of 1 ( 46 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
165--192 12 2.3 12 100 0 56 67 0 0 32 0.91
161--199 18 2.2 18 85 0 51 61 0 2 35 1.10
295--350 18 3.2 17 87 5 76 48 5 1 44 1.36
325--390 27 2.5 26 80 11 73 45 1 4 48 1.32
7023--7056 15 2.4 14 86 13 52 35 0 2 61 1.11
7065--7122 26 2.2 26 90 3 89 46 1 0 51 1.11
7584--7609 13 2.0 13 100 0 52 69 0 0 30 0.89
8278--8304 14 1.9 14 100 0 54 37 7 0 55 1.28
12773--12806 17 2.0 17 100 0 68 23 11 11 52 1.70
15226--15251 13 2.0 13 100 0 52 38 0 0 61 0.96
28485--28524 20 2.0 20 100 0 80 30 10 5 55 1.54
28494--28538 19 2.3 20 84 3 56 28 13 6 51 1.66
29945--29976 16 2.0 16 93 0 55 53 21 0 25 1.46
31222--31250 14 2.1 14 100 0 58 48 20 0 31 1.50
36449--36490 21 2.0 21 100 0 84 14 19 9 57 1.64
37535--37635 2 55.5 2 70 18 78 52 0 0 47 1.00
37534--37635 15 6.6 17 73 18 91 52 0 0 47 1.00
37532--37637 17 7.1 16 74 21 79 52 0 0 47 1.00
37535--37633 21 4.9 21 71 22 86 52 0 0 47 1.00
44603--44638 18 2.0 18 100 0 72 38 0 5 55 1.23
50301--50330 15 2.0 15 100 0 60 20 13 13 53 1.72
50426--50459 17 2.0 17 100 0 68 17 0 35 47 1.48
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
59080--59144 31 2.1 31 100 0 130 30 12 9 47 1.72
64490--64515 13 2.0 13 100 0 52 30 0 15 53 1.42
67106--67145 9 4.7 9 80 20 50 32 2 10 55 1.47
67281--67328 19 2.6 19 90 3 80 22 20 12 43 1.86
69657--69695 21 1.9 21 94 5 71 33 23 10 33 1.88
76222--76257 18 2.0 18 94 0 63 36 5 13 44 1.68
81260--81291 13 2.5 13 100 0 64 12 6 6 75 1.19
90912--90979 21 3.2 21 82 0 82 11 22 7 58 1.57
93346--93382 18 2.1 18 100 0 74 32 5 27 35 1.79
100778--100804 12 2.2 12 100 0 54 7 7 0 85 0.75
100775--100808 17 2.0 17 88 11 52 8 8 0 82 0.85
112185--112209 12 2.1 12 100 0 50 56 0 0 44 0.99
112182--112242 20 3.2 18 86 9 68 54 0 0 45 1.00
114686--114719 17 2.0 17 100 0 68 41 11 11 35 1.78
114761--114805 18 2.5 18 96 0 81 42 0 2 55 1.12
114936--114975 20 2.0 20 100 0 80 60 0 10 30 1.30
115298--115338 20 2.0 21 95 4 75 80 0 4 14 0.87
115950--116010 30 2.0 30 100 0 122 54 6 3 36 1.43
122907--122946 17 2.5 17 84 8 57 37 2 2 57 1.26
126050--126081 16 2.0 16 93 0 55 31 3 12 53 1.54
142389--142415 12 2.2 12 100 0 54 85 0 7 7 0.75
142385--142418 17 2.0 17 88 11 52 82 0 8 8 0.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
149811--149847 18 2.1 18 100 0 74 35 27 5 32 1.79
152215--152303 21 4.1 21 81 5 81 56 7 23 12 1.62
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Tables: 1
The End!