NC_044629.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_044629.1 Fritillaria unibracteata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151058
Tables: 1
This is table 1 of 1 ( 25 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3301--3328 14 2.0 14 100 0 56 42 7 21 28 1.79
7586--7619 17 2.0 17 100 0 68 52 5 0 41 1.25
7659--7701 14 3.1 14 89 0 59 41 2 0 55 1.12
13080--13137 15 4.0 15 73 22 52 58 0 5 36 1.20
27856--27895 13 3.1 13 89 10 64 50 0 0 50 1.00
30222--30277 13 4.6 13 78 17 57 53 8 1 35 1.43
30214--30275 22 2.9 22 90 4 92 53 9 1 35 1.44
30236--30262 9 3.0 9 100 0 54 55 11 0 33 1.35
44288--44328 17 2.4 17 84 8 57 51 0 0 48 1.00
44302--44328 12 2.2 12 100 0 54 48 0 0 51 1.00
44350--44392 21 2.1 20 95 4 77 58 4 13 23 1.55
45928--45953 13 2.0 13 100 0 52 46 15 0 38 1.46
54053--54082 14 2.1 14 93 0 51 53 3 6 36 1.44
54196--54228 15 2.1 16 88 5 50 21 0 6 72 1.05
56450--56510 24 2.4 24 75 8 59 42 6 1 49 1.38
76456--76504 24 2.0 24 88 0 71 26 32 14 26 1.94
78901--78937 18 2.1 18 89 0 56 21 2 10 64 1.37
86176--86223 21 2.3 21 96 0 87 12 33 8 45 1.72
88516--88596 24 3.4 24 94 0 144 32 8 23 35 1.85
109841--109891 22 2.3 23 79 3 59 33 3 3 58 1.35
122193--122222 15 2.0 15 93 0 51 43 10 0 46 1.37
124195--124225 15 2.1 15 93 0 53 38 6 6 48 1.55
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
143802--143882 24 3.4 24 94 0 144 35 23 8 32 1.85
146175--146222 21 2.2 22 92 7 89 45 8 33 12 1.72
146182--146236 21 2.5 21 88 8 74 43 10 29 16 1.82
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Tables: 1
The End!