NC_044634.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_044634.1 Sparganium stoloniferum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 161759
Tables: 1
This is table 1 of 1 ( 79 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3313--3353 11 4.0 11 81 18 52 36 0 9 53 1.34
3891--3928 19 2.0 19 94 0 67 36 5 2 55 1.37
5515--5539 13 1.9 13 100 0 50 8 16 4 72 1.24
8664--8702 13 3.1 13 88 3 62 30 12 0 56 1.37
8817--8851 15 2.5 14 90 9 54 57 2 0 40 1.14
8903--8953 19 2.7 19 93 0 84 54 9 0 35 1.33
8915--8954 10 4.1 10 93 6 73 60 10 0 30 1.30
9072--9120 13 3.5 13 82 15 62 51 10 0 38 1.36
9192--9263 11 6.7 11 75 21 57 54 1 2 41 1.23
9214--9250 13 3.0 13 92 7 60 54 0 5 40 1.24
14528--14555 14 2.0 14 100 0 56 50 0 21 28 1.49
15268--15321 18 3.0 18 83 5 65 46 5 3 44 1.44
15325--15356 15 2.1 15 94 0 55 40 0 9 50 1.35
15408--15435 14 2.0 14 100 0 56 50 0 14 35 1.43
15454--15493 18 2.2 18 100 0 80 35 10 30 25 1.88
15510--15544 17 2.1 17 100 0 70 34 11 5 48 1.63
16793--16824 16 2.0 16 93 0 55 28 12 0 59 1.34
30344--30374 12 2.6 12 94 0 53 35 6 22 35 1.80
32958--32991 17 2.0 17 94 0 59 41 11 38 8 1.73
33059--33090 16 2.0 16 100 0 64 37 12 6 43 1.68
33580--33607 14 2.0 14 100 0 56 42 14 7 35 1.73
33641--33688 26 1.9 25 84 16 64 27 4 12 56 1.54
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
34199--34257 2 30.0 2 75 3 57 45 6 1 45 1.40
34219--34257 18 2.2 18 100 0 78 48 10 0 41 1.37
38218--38257 2 20.0 2 85 10 55 50 5 0 45 1.23
38832--38870 19 2.1 19 95 0 69 38 10 7 43 1.67
39102--39126 12 2.1 12 100 0 50 32 0 24 44 1.54
48800--48838 19 2.1 19 85 0 51 33 5 7 53 1.51
48927--48968 12 3.0 15 80 20 63 30 0 14 54 1.40
49454--49547 2 52.0 2 70 19 73 51 0 3 45 1.17
49454--49587 16 8.5 16 79 12 111 53 0 3 41 1.24
49455--49545 13 6.9 13 69 15 62 51 0 3 45 1.17
49504--49623 24 5.0 23 80 14 77 60 1 4 33 1.25
49488--49587 31 3.2 31 78 13 89 57 1 4 38 1.24
49589--49621 15 2.2 15 100 0 66 66 0 6 27 1.15
51518--51555 19 2.0 19 100 0 76 57 10 5 26 1.53
54372--54403 15 2.1 15 94 0 55 21 15 6 56 1.62
55825--55853 12 2.3 13 94 5 51 24 3 24 48 1.66
62815--62849 18 1.9 18 94 0 61 40 0 5 54 1.24
62823--62859 15 2.4 16 82 13 51 40 2 5 51 1.39
63098--63179 13 5.4 16 74 22 79 29 6 2 62 1.32
63096--63179 31 2.9 29 83 11 111 28 7 2 61 1.35
63090--63181 13 6.6 13 73 24 73 29 7 2 60 1.36
63124--63164 18 2.3 18 82 0 55 31 4 4 58 1.40
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
63265--63308 15 2.9 15 82 0 61 45 0 6 47 1.29
63314--63360 22 2.1 22 100 0 94 44 12 0 42 1.42
63390--63443 14 4.1 14 72 18 62 42 9 5 42 1.60
69724--69753 15 1.9 16 93 6 53 43 0 20 36 1.52
72899--72942 21 2.1 21 86 0 61 34 22 11 31 1.90
79937--79964 14 2.0 14 100 0 56 50 7 21 21 1.72
84484--84511 14 2.0 14 100 0 56 42 7 7 42 1.59
87209--87264 15 3.7 15 84 11 71 53 0 3 42 1.18
89012--89045 15 2.3 15 94 0 59 47 2 2 47 1.32
94279--94361 21 3.8 21 91 4 121 14 27 10 46 1.78
94300--94368 21 3.3 21 95 0 120 13 31 8 46 1.73
96718--96808 15 5.6 17 71 16 77 31 7 24 36 1.84
96725--96801 24 3.2 24 96 0 145 32 9 24 33 1.87
104943--104967 12 2.1 12 100 0 50 16 24 28 32 1.96
105705--105745 20 2.0 20 95 0 73 21 31 0 46 1.52
114018--114054 15 2.5 15 95 0 65 45 13 18 21 1.84
114157--114194 19 2.0 19 100 0 76 21 15 10 52 1.72
118951--118993 18 2.6 17 82 10 54 60 0 4 34 1.17
123588--123623 18 2.0 18 88 0 54 36 8 2 52 1.46
123643--123678 18 2.0 18 94 0 63 63 5 0 30 1.17
123700--123736 15 2.4 16 90 9 67 45 0 0 54 1.00
123679--123754 25 2.9 25 80 9 73 44 0 2 52 1.14
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
123874--123941 12 5.5 12 75 10 57 36 1 1 60 1.15
123948--123978 16 1.9 16 93 0 53 22 6 9 61 1.50
123991--124039 24 2.0 24 100 0 98 32 8 8 51 1.61
132930--132966 18 2.1 18 100 0 74 18 32 0 48 1.49
136523--136560 19 2.0 19 100 0 76 52 10 15 21 1.72
136663--136699 15 2.5 15 95 0 65 21 18 13 45 1.84
144972--145012 20 2.0 20 95 0 73 46 0 31 21 1.52
145750--145774 12 2.1 12 100 0 50 32 28 24 16 1.96
153909--153999 15 5.6 17 71 16 77 36 24 7 31 1.84
153916--153992 24 3.2 24 96 0 145 33 24 9 32 1.87
156349--156417 21 3.3 21 95 0 120 46 8 31 13 1.73
156356--156438 21 3.8 21 91 4 121 46 10 27 14 1.78
161672--161705 15 2.3 15 94 0 59 47 2 2 47 1.32
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Tables: 1
The End!