NC_044636.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_044636.1 Fritillaria przewalskii chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151983
Tables: 1
This is table 1 of 1 ( 25 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3392--3419 14 2.0 14 100 0 56 42 7 21 28 1.79
7647--7680 17 2.0 17 100 0 68 52 5 0 41 1.25
27912--27971 26 2.3 26 77 11 68 48 1 1 48 1.21
27930--27969 13 3.1 13 89 10 64 50 0 0 50 1.00
30289--30335 13 3.6 13 94 0 67 53 8 2 36 1.44
30281--30320 22 1.9 20 90 10 62 52 12 0 35 1.39
30466--30490 11 2.3 11 100 0 50 44 0 0 56 0.99
44205--44250 23 2.0 23 83 8 58 56 6 0 36 1.25
44385--44425 17 2.4 17 84 8 57 51 0 0 48 1.00
44399--44425 12 2.2 12 100 0 54 48 0 0 51 1.00
46021--46046 13 2.0 13 100 0 52 46 15 0 38 1.46
54143--54172 14 2.1 14 93 0 51 53 3 6 36 1.44
54287--54319 15 2.1 16 88 5 50 21 0 6 72 1.05
56533--56594 25 2.4 25 75 5 61 43 6 1 48 1.38
58569--58627 29 2.0 29 100 0 118 38 13 10 37 1.79
76966--77014 24 2.0 24 88 0 71 26 32 14 26 1.94
79411--79447 18 2.1 18 89 0 56 21 2 10 64 1.37
86677--86724 21 2.3 21 96 0 87 12 33 8 45 1.72
89017--89097 24 3.4 24 94 0 144 32 8 23 35 1.85
110601--110651 22 2.3 23 79 3 59 33 3 3 58 1.35
122953--122982 15 2.0 15 93 0 51 43 10 0 46 1.37
124955--124985 15 2.1 15 93 0 53 38 6 6 48 1.55
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
144821--144901 24 3.4 24 94 0 144 35 23 8 32 1.85
147194--147241 21 2.2 22 92 7 89 45 8 33 12 1.72
147201--147255 21 2.5 21 88 8 74 43 10 29 16 1.82
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Tables: 1
The End!