NC_044671.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_044671.1 Atractylodes macrocephala chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153256
Tables: 1
This is table 1 of 1 ( 32 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3779--3829 25 2.0 25 92 0 84 52 1 17 27 1.55
12202--12228 13 2.1 13 100 0 54 62 7 14 14 1.51
12584--12631 24 2.0 24 95 0 87 22 6 20 50 1.71
19089--19127 18 2.2 18 100 0 78 38 41 5 15 1.69
21050--21091 21 2.0 21 95 0 75 47 16 16 19 1.83
25354--25378 12 2.1 12 100 0 50 60 8 8 24 1.52
31917--31952 18 2.0 18 88 0 54 25 0 16 58 1.38
41914--41945 16 2.0 16 100 0 64 43 0 12 43 1.42
47590--47627 18 2.1 18 90 0 58 15 13 2 68 1.32
51158--51195 17 2.2 17 100 0 76 44 10 23 21 1.83
52217--52246 15 2.0 15 93 0 51 36 16 13 33 1.88
54977--55008 16 2.0 16 100 0 64 43 25 0 31 1.55
59299--59346 20 2.3 21 92 7 89 45 4 4 45 1.41
68143--68183 21 2.0 21 95 0 73 31 24 9 34 1.88
77215--77252 19 2.0 19 100 0 76 42 10 5 42 1.62
89129--89198 21 3.3 21 89 0 86 11 21 8 58 1.59
91525--91566 18 2.3 18 100 0 84 28 11 26 33 1.92
107365--107426 32 1.9 32 93 0 106 41 22 8 27 1.82
109471--109498 12 2.3 12 100 0 56 32 17 14 35 1.90
109657--109699 9 4.8 9 91 0 59 58 11 30 0 1.34
110172--110262 45 2.0 45 95 0 164 46 9 16 27 1.79
110320--110363 21 2.1 21 95 0 79 52 20 2 25 1.58
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
112875--112903 12 2.5 12 94 5 51 55 13 13 17 1.70
112978--113019 21 2.0 21 100 0 84 19 0 33 47 1.49
113186--113273 30 2.9 30 89 3 133 35 4 30 29 1.78
113293--113369 30 2.5 32 85 8 122 46 11 7 33 1.69
113709--113744 18 2.0 18 100 0 72 50 5 11 33 1.61
125599--125630 16 2.0 16 100 0 64 50 0 6 43 1.27
130121--130182 32 1.9 32 93 0 106 27 8 22 41 1.82
145981--146022 18 2.3 18 100 0 84 33 26 11 28 1.92
148349--148403 21 2.6 21 97 0 101 60 5 23 10 1.51
148366--148418 21 2.5 21 87 0 70 58 9 18 13 1.61
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Tables: 1
The End!