NC_044694.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_044694.1 Sanguisorba officinalis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155479
Tables: 1
This is table 1 of 1 ( 52 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
233--258 12 2.2 12 100 0 52 30 0 7 61 1.24
361--404 23 1.9 23 90 0 70 36 13 15 34 1.87
4864--4907 22 2.0 22 100 0 88 50 4 18 27 1.66
6161--6194 16 2.1 16 94 0 59 64 0 0 35 0.94
6500--6554 26 2.1 26 100 0 110 25 10 0 63 1.27
9964--10006 21 2.0 22 90 4 70 39 6 16 37 1.75
10308--10345 18 2.2 18 90 4 60 55 0 0 44 0.99
10629--10658 15 2.0 15 93 0 51 10 33 3 53 1.51
12939--12971 17 1.9 17 100 0 66 36 12 12 39 1.80
26917--26941 13 1.9 13 100 0 50 32 0 20 48 1.50
28103--28127 12 2.1 12 100 0 50 32 16 0 52 1.44
30649--30679 15 2.1 15 100 0 62 58 6 19 16 1.59
32184--32220 20 2.0 20 89 10 60 45 2 0 51 1.15
32193--32250 18 3.1 18 80 5 53 44 3 3 48 1.36
36415--36444 14 2.1 14 93 0 51 10 6 16 66 1.41
36852--36891 19 2.1 19 95 0 71 60 0 5 35 1.19
36854--36898 19 2.4 19 88 3 65 62 0 8 28 1.25
36993--37040 2 26.0 2 80 16 59 52 0 0 47 1.00
36993--37041 20 2.3 22 86 6 66 53 0 0 46 1.00
44008--44039 15 2.1 15 100 0 64 31 0 6 62 1.20
45617--45664 23 2.1 23 100 0 96 37 4 20 37 1.72
47995--48036 9 4.6 9 85 14 59 42 9 4 42 1.58
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
48000--48037 18 2.1 18 100 0 76 39 10 5 44 1.61
48102--48128 12 2.2 12 100 0 54 48 0 0 51 1.00
58288--58312 12 2.1 12 100 0 50 48 0 8 44 1.32
59161--59195 18 1.9 18 88 0 52 37 5 17 40 1.73
60448--60481 17 2.0 17 100 0 68 58 0 5 35 1.22
67774--67815 20 2.1 20 90 0 66 28 7 0 64 1.20
67779--67815 11 3.5 11 78 14 51 27 8 0 64 1.21
69081--69119 21 1.9 21 94 5 71 33 23 10 33 1.88
72862--72891 13 2.3 13 94 0 51 66 6 0 26 1.16
73561--73592 16 2.0 16 93 0 55 50 6 9 34 1.60
75732--75767 18 2.0 18 100 0 72 38 5 11 44 1.63
78083--78128 23 2.0 23 100 0 92 26 21 8 43 1.81
83734--83773 20 2.0 20 100 0 80 30 5 15 50 1.65
87516--87563 20 2.4 20 96 0 87 37 25 12 25 1.91
90350--90417 21 3.2 21 82 0 82 11 22 7 58 1.57
108515--108576 32 1.9 32 96 0 115 38 20 11 29 1.88
109578--109605 14 2.0 14 100 0 56 42 21 7 28 1.79
110624--110659 18 2.0 18 94 0 63 44 11 13 30 1.79
111134--111185 20 2.5 20 96 3 95 40 3 0 55 1.18
111136--111236 22 4.7 21 87 4 107 40 1 0 57 1.10
111180--111224 9 4.7 9 79 15 54 37 0 0 62 0.96
111166--111237 11 6.5 11 75 24 64 38 1 0 59 1.06
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
114275--114305 15 2.1 15 100 0 62 61 0 6 32 1.21
124915--124946 16 2.0 16 93 0 55 31 3 12 53 1.54
130368--130403 18 2.0 18 94 0 63 30 13 11 44 1.79
131411--131448 14 2.6 15 83 8 51 28 13 15 42 1.85
131422--131449 14 2.0 14 100 0 56 28 7 21 42 1.79
132451--132512 32 1.9 32 96 0 115 29 11 20 38 1.88
150611--150699 21 4.1 21 81 5 81 56 7 23 12 1.62
153464--153511 20 2.4 20 96 0 87 25 12 25 37 1.91
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Tables: 1
The End!