NC_044701.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_044701.1 Prunus avium cultivar Summit chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157886
Tables: 1
This is table 1 of 1 ( 50 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4829--4854 13 2.0 13 100 0 52 46 7 0 46 1.31
6941--7007 19 3.6 18 76 13 64 40 0 4 55 1.20
6945--6993 24 2.2 24 85 10 68 40 0 2 57 1.10
8862--8892 15 2.1 15 93 0 53 41 6 16 35 1.74
9674--9715 10 4.0 10 80 20 50 52 2 0 45 1.13
9708--9736 8 3.8 8 90 9 51 62 0 0 37 0.96
9673--9724 22 2.3 23 75 24 58 55 1 0 42 1.10
9708--9738 15 2.1 15 100 0 62 61 0 0 38 0.96
12988--13021 17 2.0 17 100 0 68 41 11 17 29 1.85
13673--13716 17 2.6 18 82 10 56 56 0 4 38 1.20
20928--20957 15 2.0 15 93 0 51 33 13 23 30 1.93
27509--27536 13 2.2 13 100 0 56 39 0 21 39 1.54
28650--28685 17 2.1 17 94 0 63 30 5 2 61 1.33
33556--33601 5 9.4 5 86 13 69 19 0 0 80 0.71
33557--33601 9 5.2 9 84 10 67 20 0 0 80 0.72
48195--48232 18 2.1 18 100 0 76 18 10 0 71 1.14
48676--48701 13 2.0 13 100 0 52 46 0 23 30 1.53
51265--51296 16 2.0 16 100 0 64 18 12 12 56 1.67
52595--52628 11 3.2 11 91 4 52 41 0 11 47 1.40
52773--52797 12 2.1 12 100 0 50 32 16 0 52 1.44
52788--52983 7 27.6 7 75 9 128 56 3 2 38 1.29
52795--52981 14 13.6 14 80 8 156 56 2 2 37 1.27
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
52791--52981 57 3.5 57 85 8 256 56 3 2 37 1.29
52952--52988 16 2.2 17 95 4 67 54 0 5 40 1.24
58275--58324 25 2.0 25 100 0 100 40 16 16 28 1.89
60502--60527 13 2.0 13 100 0 52 53 7 15 23 1.67
65446--65472 13 2.1 13 100 0 54 37 7 29 25 1.83
71619--71655 15 2.5 15 95 0 65 56 0 5 37 1.22
76237--76272 18 2.0 18 100 0 72 38 5 11 44 1.63
83977--84020 17 2.6 17 100 0 88 47 0 11 40 1.39
90971--91038 21 3.2 21 82 0 82 11 22 7 58 1.57
93390--93441 18 2.9 18 94 0 95 32 7 28 30 1.85
96416--96466 17 3.1 16 78 16 59 52 7 0 39 1.30
96421--96458 16 2.5 16 87 8 53 50 5 0 44 1.24
100967--100992 12 2.2 12 100 0 52 7 7 0 84 0.77
109700--109763 31 2.1 31 93 0 110 40 25 7 26 1.82
115683--115720 19 2.0 19 100 0 76 57 10 5 26 1.53
115692--115733 19 2.2 19 83 8 50 59 11 4 23 1.51
115838--115920 15 5.3 15 65 18 53 48 0 0 51 1.00
115853--115892 21 2.0 20 90 5 62 62 0 0 37 0.95
116180--116204 13 1.9 13 100 0 50 44 0 0 56 0.99
116423--116459 18 2.1 17 95 5 65 56 5 2 35 1.36
130144--130177 15 2.3 15 94 0 59 0 20 5 73 1.04
134115--134178 31 2.1 31 93 0 110 26 7 25 40 1.82
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
142886--142911 12 2.2 12 100 0 52 84 0 7 7 0.77
147414--147464 17 3.1 18 75 16 56 41 0 7 50 1.31
147420--147464 16 2.8 16 83 6 56 44 0 6 48 1.29
147420--147474 15 3.6 16 78 9 62 47 0 5 47 1.25
150437--150488 18 2.9 18 94 0 95 30 28 7 32 1.85
152841--152929 21 4.1 21 81 5 81 56 7 23 12 1.62
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Tables: 1
The End!