NC_044709.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_044709.1 Allium tuberosum cultivar PingJiu2hao chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154056
Tables: 1
This is table 1 of 1 ( 40 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
8--33 13 2.0 13 100 0 52 46 7 7 38 1.61
5243--5284 20 2.1 20 100 0 84 54 0 9 35 1.33
6498--6525 14 2.0 14 100 0 56 42 7 7 42 1.59
7751--7775 12 2.1 12 100 0 50 32 8 8 52 1.60
8567--8594 14 2.0 14 100 0 56 57 0 7 35 1.26
9004--9033 14 2.1 14 93 0 51 33 3 3 60 1.30
9364--9397 17 2.0 17 100 0 68 23 5 0 70 1.09
16309--16344 18 2.0 18 100 0 72 22 22 11 44 1.84
31360--31394 17 2.1 17 100 0 70 37 11 17 34 1.85
32767--32817 24 2.1 24 100 0 102 33 15 3 47 1.64
32964--33001 12 3.0 12 85 14 58 31 7 0 60 1.25
32971--32999 14 2.1 14 100 0 58 27 6 0 65 1.18
33095--33132 18 2.1 18 100 0 76 42 5 18 34 1.73
46797--46843 24 1.9 25 91 4 78 46 4 2 46 1.34
47102--47127 13 2.0 13 100 0 52 46 0 0 53 1.00
48311--48450 74 1.9 75 89 4 221 25 19 26 29 1.98
48587--48634 23 2.1 22 81 11 53 52 2 20 25 1.58
56495--56523 14 2.1 14 100 0 58 65 6 13 13 1.45
57031--57070 20 2.0 20 100 0 80 25 15 20 40 1.90
57596--57642 21 2.2 22 84 3 60 34 6 12 46 1.67
58786--58815 15 2.0 15 100 0 60 73 0 6 20 1.05
65812--65847 17 2.1 17 100 0 72 44 0 16 38 1.48
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
66730--66820 45 2.0 45 97 0 173 32 7 10 48 1.67
66732--66806 24 3.2 24 64 17 68 34 6 13 45 1.70
67306--67346 21 2.0 21 90 0 64 31 29 12 26 1.92
71419--71443 12 2.1 12 100 0 50 52 24 8 16 1.70
79729--79758 12 2.5 12 94 0 51 50 0 0 50 1.00
80917--80942 13 2.0 13 100 0 52 53 0 15 30 1.42
81032--81090 17 3.5 17 80 11 59 52 10 11 25 1.69
81059--81092 17 2.0 17 100 0 68 52 11 17 17 1.73
81371--81406 18 2.0 18 100 0 72 33 5 0 61 1.19
85751--85802 23 2.3 23 96 3 97 46 7 21 25 1.77
88397--88465 21 3.3 21 97 0 129 13 30 8 47 1.72
90815--90881 24 3.6 18 74 25 59 32 7 22 37 1.82
90822--90874 24 2.2 24 96 0 97 33 9 22 33 1.86
146244--146310 24 3.6 18 74 25 59 37 22 7 32 1.82
146251--146303 24 2.2 24 96 0 97 33 22 9 33 1.86
148660--148728 21 3.3 21 97 0 129 47 8 30 13 1.72
148660--148749 21 4.1 21 92 4 126 48 10 27 13 1.74
151323--151374 23 2.3 23 96 3 97 25 21 7 46 1.77
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Tables: 1
The End!