NC_044775.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_044775.1 Zingiber officinale chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 162621
Tables: 1
This is table 1 of 1 ( 62 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5406--5439 17 2.0 17 88 0 50 50 11 11 26 1.73
5961--5994 17 2.0 17 94 0 59 23 14 20 41 1.89
6441--6482 15 2.9 14 82 10 57 47 4 0 47 1.23
7375--7409 17 2.1 17 94 0 61 65 2 5 25 1.28
8178--8202 13 1.9 13 100 0 50 72 12 0 16 1.13
8401--8428 14 2.0 14 100 0 56 28 21 0 50 1.49
8718--8790 17 4.3 17 93 6 98 45 6 1 46 1.38
8750--8831 2 42.5 2 68 20 50 45 4 2 47 1.37
8792--8835 21 2.1 20 87 8 61 50 0 2 47 1.13
14493--14523 16 1.9 16 93 0 53 51 12 0 35 1.40
14515--14587 16 4.6 16 76 11 69 60 1 0 38 1.06
14541--14584 23 2.0 20 87 12 61 63 0 0 36 0.95
14685--14749 24 2.6 25 81 11 73 40 0 0 60 0.97
14684--14749 15 4.4 15 72 12 55 39 0 0 60 0.97
14689--14729 20 2.0 20 100 0 82 39 0 0 60 0.96
14689--14747 20 2.9 20 87 7 57 42 0 0 57 0.98
15072--15109 12 3.2 12 81 3 51 71 0 0 28 0.87
28238--28318 30 2.8 28 83 12 108 41 8 1 48 1.42
28238--28317 32 2.6 33 78 20 93 42 8 1 47 1.42
30026--30063 20 1.9 20 100 0 76 65 5 7 21 1.38
33224--33264 9 4.4 9 87 6 55 43 2 4 48 1.37
33224--33261 19 2.0 19 94 0 67 42 2 5 50 1.39
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
48562--48592 15 2.1 15 93 0 53 16 6 9 67 1.39
49089--49129 14 3.1 14 86 10 59 39 12 7 41 1.70
53321--53345 12 2.1 12 100 0 50 24 16 8 52 1.70
54649--54676 14 2.0 14 100 0 56 57 0 7 35 1.26
62476--62526 15 3.4 15 74 17 52 35 5 0 58 1.22
62467--62522 30 1.9 30 88 3 87 39 5 0 55 1.23
62523--62554 16 2.0 17 88 11 50 46 3 0 50 1.17
62593--62638 23 2.1 23 84 11 62 47 6 0 45 1.28
62693--62724 16 2.0 16 100 0 64 56 0 12 31 1.37
66826--66867 21 2.0 21 81 9 50 23 9 14 52 1.71
68347--68399 15 3.5 15 81 2 70 49 0 9 41 1.35
68372--68450 40 2.0 40 83 7 101 45 2 10 41 1.51
68471--68498 13 2.2 13 100 0 56 71 0 21 7 1.09
70327--70370 22 2.0 22 100 0 88 31 4 22 40 1.74
71192--71221 14 2.1 14 100 0 60 56 0 13 30 1.37
71321--71385 21 3.1 21 88 0 103 35 24 7 32 1.84
75456--75484 14 2.1 14 100 0 58 34 6 6 51 1.55
82861--82909 24 2.0 24 92 0 80 28 32 12 26 1.92
84085--84130 22 2.1 21 84 4 56 8 6 4 80 1.01
84188--84235 24 2.0 24 100 0 96 25 12 12 50 1.75
85759--85792 17 2.1 16 88 5 50 23 0 0 76 0.79
85759--85799 11 3.5 13 83 16 54 24 0 0 75 0.80
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
86080--86106 12 2.2 12 100 0 54 33 7 0 59 1.25
92838--92923 24 3.7 24 93 4 133 13 24 11 50 1.75
92885--92930 21 2.2 21 92 0 74 13 30 8 47 1.72
94167--94209 21 2.0 21 90 0 68 32 9 25 32 1.88
95352--95399 24 2.0 24 87 0 69 31 10 25 33 1.89
103890--103937 23 2.1 23 92 0 78 41 10 4 43 1.58
115073--115114 21 2.0 21 90 0 66 52 7 26 14 1.67
116672--116726 24 2.3 24 100 0 110 58 0 25 16 1.38
124854--124927 11 7.0 11 74 18 59 48 8 0 43 1.32
124921--124963 16 2.6 16 92 3 68 30 4 6 58 1.45
124941--124990 25 2.0 25 84 0 64 36 8 4 52 1.50
130909--130942 16 2.1 16 100 0 68 50 0 5 44 1.26
133382--133436 24 2.3 24 100 0 110 16 25 0 58 1.38
134994--135035 21 2.0 21 90 0 66 14 26 7 52 1.67
146171--146218 23 2.1 23 92 0 78 43 4 10 41 1.58
154709--154777 24 2.9 24 76 8 70 34 26 7 31 1.84
155899--155941 21 2.0 21 90 0 68 32 25 9 32 1.88
157185--157270 24 3.7 24 93 4 133 50 11 24 13 1.75
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Tables: 1
The End!