NC_045045.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_045045.1 Lonicera confusa isolate B272 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155346
Tables: 1
This is table 1 of 1 ( 68 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
29593--29622 15 2.0 15 93 0 51 23 26 3 46 1.68
33318--33355 14 2.6 14 95 4 67 73 0 5 21 1.02
33305--33366 21 3.0 21 84 9 67 72 0 6 20 1.06
33307--33372 19 3.6 19 70 14 57 72 0 7 19 1.08
44513--44587 33 2.3 33 100 0 150 56 2 5 36 1.36
48522--48561 13 2.9 14 88 7 64 32 17 7 42 1.77
52096--52159 31 2.1 31 100 0 128 40 18 26 14 1.89
59812--59919 45 2.4 45 100 0 216 28 25 25 20 1.99
60179--60297 12 9.9 12 81 0 130 40 2 47 9 1.49
60179--60301 24 5.1 24 95 0 210 40 3 46 9 1.53
60323--60365 21 2.0 21 95 0 77 32 20 6 39 1.80
60661--60747 33 2.6 33 85 3 113 20 21 34 22 1.97
60731--60844 45 2.5 45 100 0 228 21 20 40 18 1.92
60761--60871 27 4.4 27 76 19 141 18 22 40 18 1.91
60862--60905 18 2.4 18 100 0 88 34 11 43 11 1.77
60915--61065 27 5.6 27 90 3 232 26 21 26 25 2.00
60902--61067 54 3.1 54 92 1 271 25 22 27 24 2.00
60915--61065 81 1.9 81 94 2 268 26 21 26 25 2.00
61200--61293 33 2.8 33 96 0 170 21 20 37 21 1.95
63029--63071 21 2.0 21 95 0 77 27 6 18 46 1.75
71368--71421 20 2.9 20 71 18 62 46 9 12 31 1.74
71371--71428 18 3.2 18 70 18 57 41 10 12 36 1.76
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
71996--72099 21 5.0 21 97 0 181 28 32 16 22 1.95
83632--83658 12 2.2 12 100 0 54 22 18 7 51 1.70
84192--84242 17 3.0 17 97 0 93 11 21 5 60 1.52
84768--84806 18 2.2 18 86 4 53 41 7 10 41 1.68
86236--86287 24 2.2 24 85 0 68 23 15 7 53 1.67
87083--87115 16 2.2 15 89 10 50 36 6 0 57 1.23
91620--91722 24 4.4 24 89 3 131 13 24 13 48 1.78
93264--93312 24 2.0 24 84 0 62 32 22 14 30 1.93
93579--93608 15 2.0 15 100 0 60 60 0 26 13 1.34
93610--93676 18 3.7 18 84 7 100 14 4 58 22 1.55
93610--93691 36 2.3 36 97 0 155 15 4 58 20 1.56
93610--93687 18 4.3 18 82 9 97 16 5 57 20 1.58
94450--94517 15 4.5 15 81 7 75 35 4 29 30 1.77
94446--94530 30 2.8 30 80 7 100 34 4 29 31 1.78
95827--95955 12 10.0 12 69 17 55 36 6 33 23 1.82
95851--95898 24 2.0 24 84 8 62 35 2 39 22 1.66
95927--95985 12 4.9 12 80 0 64 49 0 38 11 1.40
95834--95999 78 2.1 78 83 2 199 39 6 33 19 1.78
100240--100281 21 2.0 21 95 0 75 19 19 21 40 1.92
103619--103662 22 2.0 22 100 0 88 27 9 40 22 1.84
112004--112046 22 2.0 22 95 4 79 55 9 4 30 1.52
112056--112101 23 2.0 24 86 4 67 60 6 6 26 1.46
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
112062--112097 18 2.0 18 100 0 72 61 5 5 27 1.41
112402--112447 24 1.9 24 95 0 83 50 21 6 21 1.71
115720--115759 22 2.0 20 85 14 55 32 15 5 47 1.66
128209--128255 24 2.0 24 95 0 85 12 17 12 57 1.65
128595--128620 12 2.2 12 100 0 52 7 38 0 53 1.30
129760--129820 30 2.0 30 93 0 104 31 16 16 36 1.91
131529--131563 17 2.1 17 88 0 52 37 2 2 57 1.29
132022--132067 24 1.9 24 95 0 83 21 6 21 50 1.71
132372--132407 18 2.0 18 100 0 72 27 5 5 61 1.41
132368--132413 23 2.0 24 86 4 67 26 6 6 60 1.46
132423--132465 22 2.0 22 95 4 79 30 4 9 55 1.52
140807--140850 22 2.0 22 100 0 88 22 40 9 27 1.84
144188--144229 21 2.0 21 95 0 75 40 21 19 19 1.92
148484--148542 12 4.9 12 80 0 64 11 38 0 49 1.40
148484--148542 24 2.5 24 86 5 84 11 38 0 49 1.40
148485--148641 24 6.2 24 71 14 66 20 34 5 39 1.76
148582--148618 12 3.1 12 96 0 65 21 43 0 35 1.53
149952--150019 15 4.5 15 86 0 82 30 29 4 35 1.77
149939--150023 30 2.8 30 80 7 100 31 29 4 34 1.78
150793--150859 18 3.7 18 84 7 100 22 58 4 14 1.55
150778--150859 36 2.3 36 97 0 155 20 58 4 15 1.56
150861--150890 15 2.0 15 100 0 60 13 26 0 60 1.34
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
151157--151205 24 2.0 24 84 0 62 30 14 22 32 1.93
152719--152849 24 5.7 24 82 7 139 50 12 24 12 1.75
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Tables: 1
The End!