NC_045049.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_045049.1 Pterocephalus hookeri isolate C66 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158102
Tables: 1
This is table 1 of 1 ( 113 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
307--334 1 28.0 1 100 0 56 100 0 0 0 0.00
4987--5092 52 2.0 52 100 0 212 33 28 7 31 1.85
6318--6348 15 2.1 15 100 0 62 35 25 0 38 1.56
7522--7589 32 2.1 32 100 0 136 38 20 17 23 1.93
26917--26946 15 2.0 15 100 0 60 46 13 6 33 1.69
29886--29915 15 2.0 15 93 0 51 23 26 3 46 1.68
30171--30198 1 28.0 1 100 0 56 100 0 0 0 0.00
30238--30267 15 2.0 15 93 0 51 23 26 3 46 1.68
31813--31855 20 2.2 20 100 0 86 30 13 9 46 1.75
32494--32609 55 2.1 54 96 1 214 24 17 17 41 1.90
33653--33807 77 2.0 77 100 0 310 25 9 29 34 1.88
34251--34297 19 2.6 17 87 12 76 46 10 0 42 1.38
34246--34294 19 2.6 19 90 0 71 46 10 2 40 1.49
34258--34317 10 6.2 10 82 5 70 48 11 5 35 1.61
34258--34298 19 2.2 19 100 0 82 48 9 0 41 1.36
37814--37931 57 2.1 57 100 0 236 19 16 20 43 1.88
44984--45134 74 2.0 75 98 1 295 40 13 6 39 1.71
47681--47716 17 2.1 17 100 0 72 58 19 5 16 1.58
48760--48795 18 2.0 18 100 0 72 61 0 11 27 1.30
50563--50606 19 2.3 19 100 0 88 25 20 20 34 1.97
51437--51500 29 2.2 29 97 2 119 32 20 15 31 1.94
53423--53577 77 2.0 77 100 0 310 27 12 12 47 1.78
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
53501--53766 132 2.0 133 99 0 525 26 12 18 41 1.87
54215--54267 26 2.0 26 100 0 106 54 15 18 11 1.70
55039--55079 20 2.0 20 100 0 82 14 9 24 51 1.72
60271--61604 1 1334.0 1 100 0 2668 100 0 0 0 0.00
61620--61663 15 2.9 15 100 0 88 13 20 31 34 1.92
61621--61673 15 3.5 15 92 5 72 16 22 28 32 1.96
61701--61766 15 4.4 15 83 7 89 28 19 31 19 1.97
61698--61766 30 2.3 30 92 5 113 27 20 30 21 1.98
63091--63180 44 2.0 44 100 0 180 47 8 13 30 1.73
63504--63669 82 2.0 82 100 0 332 32 12 20 34 1.89
64896--64968 36 2.0 36 100 0 146 26 16 19 38 1.92
67241--67309 32 2.2 32 100 0 138 39 11 23 26 1.88
67527--67599 35 2.1 35 100 0 146 41 13 26 19 1.88
67763--67842 39 2.1 39 100 0 160 43 10 12 33 1.76
68399--68461 28 2.2 28 97 2 117 23 38 3 34 1.71
69539--69598 30 2.0 30 100 0 120 40 3 33 23 1.71
69539--69589 17 3.2 17 68 21 56 41 3 31 23 1.73
70151--70198 24 2.0 24 100 0 96 20 8 8 62 1.49
71718--71751 17 2.0 17 100 0 68 47 11 5 35 1.65
72743--72845 21 4.9 21 98 0 197 28 33 14 23 1.94
73054--73362 48 6.5 48 73 13 271 49 13 18 17 1.79
73034--73143 21 5.0 21 83 12 139 49 12 18 20 1.79
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
73245--73333 21 4.0 21 79 16 106 48 13 19 19 1.81
73265--73358 27 3.7 27 79 16 128 47 13 19 19 1.82
73055--73412 190 1.9 190 100 0 716 47 15 19 17 1.82
81038--81133 47 2.0 47 100 0 192 36 4 18 40 1.70
83337--83385 24 2.0 24 84 0 62 30 28 12 28 1.93
84624--84665 18 2.3 18 100 0 84 40 16 9 33 1.81
85206--85286 17 5.0 17 77 11 98 12 18 7 61 1.53
85206--85308 47 2.2 47 98 0 197 11 18 5 64 1.46
87363--87489 62 2.0 62 100 0 254 28 18 15 37 1.92
87714--87790 39 2.0 39 89 0 118 22 18 14 45 1.85
90606--90777 86 2.0 86 100 0 344 32 17 18 31 1.94
90951--91048 51 1.9 51 93 2 171 31 15 7 45 1.73
91580--91637 29 2.0 29 100 0 116 17 13 44 24 1.85
93092--93204 21 5.2 21 82 6 145 10 23 11 54 1.67
93078--93209 66 2.0 66 100 0 264 10 24 12 53 1.69
93092--93204 45 2.6 43 79 6 147 10 23 11 54 1.67
94300--94328 1 29.0 1 100 0 58 0 0 0 100 0.00
95138--95167 15 2.0 15 100 0 60 60 0 26 13 1.34
95171--95270 18 5.6 18 91 4 148 17 5 56 22 1.60
96103--96170 15 4.5 15 88 0 73 33 2 36 26 1.72
97556--97613 24 2.4 24 94 0 98 39 3 31 25 1.73
97780--97949 85 2.0 85 100 0 340 31 14 27 27 1.94
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
99396--99544 74 2.0 74 100 0 298 24 22 20 32 1.98
100818--100847 15 2.0 15 100 0 60 33 6 20 40 1.78
102046--102096 25 2.0 25 100 0 102 15 23 15 45 1.85
102753--102828 37 2.1 37 100 0 152 27 18 18 35 1.94
103908--104164 129 2.0 129 100 0 514 24 21 11 42 1.86
108027--108108 41 2.0 41 100 0 164 31 14 34 19 1.92
111103--111159 19 3.0 19 100 0 114 10 15 36 36 1.82
113025--113053 15 1.9 15 100 0 58 82 0 13 3 0.79
113025--113061 16 2.4 15 90 4 56 81 2 13 2 0.92
113466--113530 1 65.0 1 100 0 130 100 0 0 0 0.00
114043--115010 1 968.0 1 100 0 1936 100 0 0 0 0.00
118127--118297 1 171.0 1 100 0 342 100 0 0 0 0.00
123445--123603 78 2.0 78 100 0 318 40 17 15 26 1.89
128301--128437 67 2.0 67 100 0 274 35 21 10 32 1.87
129020--129447 1 428.0 1 100 0 856 100 0 0 0 0.00
129726--129801 1 76.0 1 100 0 152 100 0 0 0 0.00
130357--130405 24 2.0 24 96 0 89 36 18 8 36 1.81
130733--130931 1 199.0 1 100 0 398 100 0 0 0 0.00
131900--131943 1 44.0 1 100 0 88 100 0 0 0 0.00
132033--132195 1 163.0 1 100 0 326 100 0 0 0 0.00
132497--132533 1 37.0 1 100 0 74 100 0 0 0 0.00
133002--133096 48 2.0 48 100 0 190 2 40 6 51 1.39
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
133877--133912 18 2.0 18 100 0 72 22 27 16 33 1.95
134022--134060 9 4.6 9 81 12 55 28 10 15 46 1.78
134099--134906 1 808.0 1 100 0 1616 100 0 0 0 0.00
135278--135389 1 112.0 1 100 0 224 100 0 0 0 0.00
135844--135872 15 1.9 15 100 0 58 3 13 0 82 0.79
137738--137794 19 3.0 19 100 0 114 36 36 15 10 1.82
140789--140870 41 2.0 41 100 0 164 19 34 14 31 1.92
144733--144989 129 2.0 129 100 0 514 42 11 21 24 1.86
146069--146144 37 2.1 37 100 0 152 35 18 18 27 1.94
146801--146851 25 2.0 25 100 0 102 45 15 23 15 1.85
148050--148079 15 2.0 15 100 0 60 40 20 6 33 1.78
149353--149501 74 2.0 74 100 0 298 32 20 22 24 1.98
150948--151117 85 2.0 85 100 0 340 27 27 14 31 1.94
151284--151341 24 2.4 24 94 0 98 25 31 3 39 1.73
152727--152795 15 4.6 15 87 0 75 26 37 2 33 1.71
153627--153726 18 5.6 18 91 4 148 22 56 5 17 1.60
153730--153759 15 2.0 15 100 0 60 13 26 0 60 1.34
154063--154119 27 2.1 27 90 0 87 28 17 21 33 1.96
154569--154597 1 29.0 1 100 0 58 100 0 0 0 0.00
155693--155805 21 5.2 21 82 6 145 54 11 23 10 1.67
155688--155819 66 2.0 66 100 0 264 53 12 24 10 1.69
155693--155827 45 3.1 43 74 14 132 53 11 23 11 1.69
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
157260--157317 29 2.0 29 100 0 116 24 44 13 17 1.85
157831--157968 51 3.2 41 77 20 154 42 7 15 33 1.77
157849--157946 51 1.9 50 93 2 169 45 7 15 31 1.73
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Tables: 1
The End!