NC_045242.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_045242.1 Curcuma phaeocaulis voucher CUR04 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 162133
Tables: 1
This is table 1 of 1 ( 74 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6020--6053 17 2.0 17 100 0 68 23 17 17 41 1.90
6219--6244 13 2.0 13 100 0 52 15 0 30 53 1.42
7276--7300 13 1.9 13 100 0 50 72 12 0 16 1.13
7796--7853 11 5.2 11 80 12 73 43 1 6 48 1.40
7792--7869 34 2.3 34 95 0 138 42 2 5 50 1.38
7843--7912 27 2.7 24 80 20 70 47 2 1 48 1.25
7859--7906 16 2.9 16 85 11 62 45 4 0 50 1.21
7856--7917 27 2.3 27 88 5 90 48 3 0 48 1.17
7856--7918 17 3.8 17 78 21 64 47 3 0 49 1.17
7884--7927 19 2.5 19 85 10 58 45 0 0 54 0.99
13660--13699 21 2.0 20 85 5 53 65 5 0 30 1.14
13807--13837 15 2.1 14 94 5 53 35 0 0 64 0.94
13955--14010 23 2.5 22 91 2 85 66 0 1 32 1.03
13953--13996 15 2.9 15 87 9 63 65 0 0 34 0.93
13985--14035 14 3.7 14 92 7 79 62 0 5 31 1.19
13985--14038 26 2.0 26 80 16 58 62 0 7 29 1.22
16586--16612 14 1.9 14 100 0 54 62 7 7 22 1.46
25178--25225 21 2.3 21 92 0 78 18 18 18 43 1.88
29171--29208 20 1.9 20 94 0 67 63 5 10 21 1.46
30282--30338 16 3.6 16 95 2 98 33 19 7 40 1.78
31704--31735 15 2.1 15 100 0 64 21 6 12 59 1.55
31804--31868 29 2.2 29 91 0 103 46 15 18 20 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
32553--32594 2 21.0 2 81 18 52 47 0 4 47 1.23
32541--32589 16 3.3 15 81 13 57 51 2 2 44 1.24
33568--33609 21 2.0 21 85 0 57 35 14 9 40 1.78
47828--47929 2 53.0 2 75 7 86 52 0 2 43 1.22
47964--47994 15 2.1 15 93 0 53 16 6 9 67 1.39
48212--48242 13 2.5 13 94 5 55 48 29 0 22 1.51
48395--48463 31 2.2 31 100 0 138 44 13 5 36 1.67
48396--48448 17 3.3 17 65 24 51 47 11 7 33 1.68
48439--48481 22 2.0 22 100 0 86 46 16 4 32 1.67
48439--48476 12 3.3 12 78 14 53 47 15 5 31 1.68
48557--48597 17 2.5 16 92 7 73 51 4 0 43 1.23
48557--48597 2 21.0 2 85 5 57 51 4 0 43 1.23
53100--53133 12 2.9 12 95 4 61 50 0 0 50 1.00
53219--53267 24 2.0 24 100 0 98 28 8 4 59 1.45
59546--59606 30 2.0 30 100 0 122 60 3 6 29 1.38
61863--61898 13 2.8 13 91 4 56 44 0 0 55 0.99
61906--61972 30 2.3 30 87 7 93 38 4 0 56 1.19
61915--61972 15 4.2 14 73 16 50 36 5 0 58 1.20
62043--62089 23 2.0 23 84 8 60 51 6 0 42 1.27
62149--62180 16 2.0 16 100 0 64 56 0 12 31 1.37
66325--66366 21 2.0 21 81 9 50 21 9 16 52 1.72
67864--67924 15 4.1 15 75 12 72 49 0 8 42 1.32
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
67874--67953 32 2.6 31 83 11 94 46 1 8 43 1.42
67980--68007 13 2.2 13 100 0 56 71 0 21 7 1.09
70810--70874 21 3.1 21 88 0 103 35 24 7 32 1.84
74438--74485 19 2.5 19 100 0 96 33 18 6 41 1.76
74952--74980 14 2.1 14 100 0 58 34 6 6 51 1.55
82364--82412 24 2.0 24 92 0 80 28 32 12 26 1.92
83588--83638 22 2.2 23 86 6 68 9 3 7 78 1.07
83696--83743 24 2.0 24 95 0 87 25 10 12 52 1.71
85440--85475 18 2.0 18 100 0 72 38 11 5 44 1.63
85441--85489 18 2.9 17 88 11 66 42 6 8 42 1.59
89709--89804 50 1.9 50 97 0 183 42 17 9 30 1.81
92348--92409 21 2.8 22 90 7 90 14 25 11 48 1.77
92369--92416 21 2.3 21 92 0 78 12 31 8 47 1.71
93653--93695 21 2.0 21 90 0 68 32 9 25 32 1.88
94847--94894 24 2.0 24 87 0 69 31 10 25 33 1.89
103392--103439 23 2.1 23 96 0 87 41 8 4 45 1.53
114586--114627 21 2.0 21 90 0 66 52 7 26 14 1.67
119401--119456 23 2.4 22 80 11 67 42 0 5 51 1.24
124473--124518 9 5.2 9 82 15 60 36 0 0 63 0.95
124417--124524 55 1.9 58 81 12 136 32 1 0 65 1.03
124474--124522 14 3.6 14 81 10 57 36 0 0 63 0.95
124447--124519 12 5.6 13 74 11 69 31 0 0 68 0.90
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
124436--124524 11 8.2 11 80 12 87 29 1 0 69 0.95
134520--134561 21 2.0 21 90 0 66 14 26 7 52 1.67
145708--145755 23 2.1 23 96 0 87 45 4 8 41 1.53
154253--154321 24 2.9 24 76 8 70 34 26 7 31 1.84
155452--155494 21 2.0 21 90 0 68 32 25 9 32 1.88
156731--156799 21 3.1 22 85 8 86 49 10 27 13 1.73
156738--156799 21 2.7 23 90 7 92 48 11 25 14 1.77
159343--159438 50 1.9 50 97 0 183 30 9 17 42 1.81
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Tables: 1
The End!