NC_045384.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_045384.1 Liriope muscari chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156754
Tables: 1
This is table 1 of 1 ( 40 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7274--7298 12 2.1 12 100 0 50 44 8 8 40 1.63
9058--9090 15 2.2 15 100 0 66 24 6 0 69 1.10
35807--35836 14 2.1 14 100 0 60 20 6 23 50 1.71
36161--36199 14 2.7 14 92 4 60 33 0 15 51 1.44
44803--44832 15 2.0 15 93 0 51 43 0 36 20 1.52
46386--46420 17 2.1 17 94 0 61 42 8 5 42 1.59
46456--46490 17 2.1 17 100 0 70 54 5 5 34 1.48
46486--46554 23 2.8 24 81 14 79 49 4 1 44 1.31
46483--46549 9 6.9 10 69 19 52 49 2 1 46 1.26
46704--46737 10 3.3 10 92 8 59 38 8 0 52 1.33
46708--46754 14 3.5 14 80 16 55 40 8 0 51 1.33
46743--46799 16 3.8 15 75 13 55 52 1 0 45 1.11
46755--46797 20 2.1 21 86 4 61 58 0 0 41 0.98
46761--46799 13 2.8 13 85 11 51 56 0 0 43 0.99
51073--51124 27 1.9 27 88 7 79 55 7 3 32 1.46
51219--51253 13 2.8 13 95 4 63 37 0 0 62 0.95
61340--61369 10 3.1 10 90 9 53 63 6 0 30 1.20
61694--61727 12 2.7 13 90 9 61 29 8 0 61 1.26
67181--67222 19 2.3 19 87 4 59 21 14 19 45 1.85
69132--69172 21 2.0 21 90 4 66 68 4 2 24 1.22
69239--69282 21 2.1 21 86 0 61 34 25 9 31 1.87
80576--80624 24 2.0 24 92 0 80 28 32 12 26 1.92
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
83413--83449 19 1.9 19 94 0 65 27 5 2 64 1.28
87775--87826 23 2.3 23 96 3 97 46 7 21 25 1.77
90262--90372 21 5.1 21 92 3 159 13 25 9 51 1.72
92716--92782 24 3.6 18 74 25 59 32 7 22 37 1.82
92723--92775 24 2.2 24 96 0 97 33 9 22 33 1.86
115373--115412 11 3.6 11 87 12 64 30 0 0 70 0.88
115373--115416 22 2.0 22 100 0 88 31 0 0 68 0.90
119474--119533 17 3.5 17 77 11 68 28 3 1 66 1.17
119488--119543 29 1.9 29 82 7 69 26 1 7 64 1.29
120737--120768 17 1.9 17 93 6 57 15 12 0 71 1.14
121564--121591 9 3.1 9 100 0 56 32 0 10 57 1.33
127653--127692 15 2.7 15 84 0 53 35 7 2 55 1.42
129191--129243 3 17.7 3 82 0 52 33 5 5 54 1.47
129191--129247 15 3.8 15 100 0 114 33 7 7 52 1.55
149091--149157 24 3.6 18 74 25 59 37 22 7 32 1.82
149098--149150 24 2.2 24 96 0 97 33 22 9 33 1.86
151501--151591 21 4.3 21 95 0 155 51 8 26 13 1.69
154047--154098 23 2.3 23 96 3 97 25 21 7 46 1.77
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Tables: 1
The End!