NC_045891.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_045891.1 Daphne genkwa chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 132869
Tables: 1
This is table 1 of 1 ( 40 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1646--1676 15 2.1 15 93 0 53 48 9 6 35 1.62
3242--3266 12 2.1 12 100 0 50 0 32 8 60 1.26
6360--6399 17 2.4 17 100 0 80 37 5 7 50 1.53
9318--9350 16 2.1 16 100 0 66 24 33 18 24 1.97
10553--10594 15 2.6 16 85 7 50 54 9 7 28 1.59
10642--10685 19 2.2 21 92 8 74 38 0 4 56 1.20
17409--17439 15 2.1 15 100 0 62 51 6 12 29 1.65
28593--28637 22 2.0 22 100 0 90 31 8 8 51 1.64
30091--30175 37 2.3 37 95 2 154 35 7 4 52 1.49
30117--30175 18 3.2 18 68 20 50 33 8 5 52 1.54
36958--36996 19 2.0 19 85 5 51 28 10 7 53 1.62
37253--37279 13 2.1 13 100 0 54 22 7 22 48 1.75
37771--37837 2 33.5 2 77 16 68 52 0 5 41 1.26
37799--37846 16 3.0 16 88 11 80 50 0 10 39 1.37
38097--38135 15 2.6 15 95 0 69 71 0 7 20 1.10
38154--38192 11 3.4 11 83 13 51 51 0 0 48 1.00
38154--38187 11 2.8 13 91 8 54 50 0 0 50 1.00
44519--44544 13 2.0 13 100 0 52 30 7 0 61 1.24
48784--48816 16 2.1 16 100 0 66 63 12 6 18 1.48
49146--49183 20 1.9 19 94 5 67 39 5 5 50 1.48
49170--49202 12 2.9 11 91 8 57 36 0 6 57 1.23
51783--51816 17 2.0 17 100 0 68 35 17 0 47 1.48
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
53086--53111 12 2.2 12 100 0 52 42 7 0 50 1.31
60102--60161 21 2.9 21 92 0 93 31 6 28 33 1.83
60156--60260 21 5.0 21 85 0 120 40 13 20 25 1.89
67321--67350 15 2.0 15 100 0 60 26 0 20 53 1.46
68617--68649 15 2.2 15 100 0 66 42 6 6 45 1.53
83085--83119 17 2.1 17 100 0 70 51 0 0 48 1.00
87911--87946 13 2.8 13 95 0 63 52 8 2 36 1.46
90565--90612 24 2.1 23 85 11 64 12 25 6 56 1.59
92947--93013 18 3.7 18 91 0 98 25 13 23 37 1.92
94260--94354 18 5.3 18 97 0 172 32 10 41 15 1.82
95116--95141 13 2.0 13 100 0 52 61 0 7 30 1.24
106769--106899 69 1.9 69 92 3 219 39 17 9 32 1.83
107527--107602 21 3.6 21 96 3 136 36 9 5 48 1.58
117378--117425 24 2.1 22 84 7 60 58 8 8 25 1.55
117922--117959 14 2.8 14 88 11 53 73 0 10 15 1.09
124192--124286 18 5.3 18 97 0 172 15 41 10 32 1.82
125533--125599 18 3.7 18 91 0 98 37 23 13 25 1.92
130600--130635 13 2.8 13 95 0 63 36 2 8 52 1.46
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!