NC_045947.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_045947.1 Psammosilene tunicoides voucher YGYN2015071101(IBSC) plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153978
Tables: 1
This is table 1 of 1 ( 27 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
77--106 15 2.0 15 100 0 60 33 13 13 40 1.83
9664--9701 20 2.0 20 89 5 60 34 7 0 57 1.28
28594--28622 14 2.1 14 100 0 58 27 6 6 58 1.50
29457--29498 21 2.0 21 100 0 84 61 4 4 28 1.36
35271--35306 18 2.0 18 100 0 72 55 5 5 33 1.46
42098--42126 12 2.4 12 100 0 58 48 0 0 51 1.00
48042--48083 15 2.9 15 96 3 77 33 11 14 40 1.82
63111--63154 18 2.4 18 100 0 88 22 4 0 72 1.02
67222--67256 17 2.1 17 100 0 70 40 5 31 22 1.78
67718--67767 25 2.1 23 82 14 57 26 6 0 68 1.13
67733--67794 18 3.4 18 78 8 54 29 3 0 67 1.06
76390--76418 14 2.1 14 100 0 58 72 0 6 20 1.07
88221--88310 21 4.1 21 75 4 72 12 23 10 54 1.67
90634--90674 18 2.3 18 100 0 82 29 9 26 34 1.88
90612--90660 24 2.0 24 100 0 98 28 8 24 38 1.84
90612--90678 24 3.0 24 73 24 83 28 10 25 35 1.89
98460--98488 14 2.1 14 100 0 58 20 13 0 65 1.26
98476--98513 18 2.1 18 95 0 67 26 5 7 60 1.46
123303--123339 16 2.2 17 90 4 58 29 16 5 48 1.68
127226--127290 15 4.3 15 72 3 51 4 18 4 72 1.20
131181--131246 32 2.1 32 88 0 96 25 10 21 42 1.85
139433--139470 18 2.1 18 95 0 67 60 7 5 26 1.46
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
139458--139486 14 2.1 14 100 0 58 65 0 13 20 1.26
147286--147334 24 2.0 24 100 0 98 38 24 8 28 1.84
147272--147312 18 2.3 18 100 0 82 34 26 9 29 1.88
149654--149703 21 2.4 21 83 3 57 56 12 22 10 1.65
149670--149718 24 2.2 21 85 10 62 51 10 22 16 1.74
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Tables: 1
The End!