NC_046038.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_046038.1 Siphonostegia chinensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 148961
Tables: 1
This is table 1 of 1 ( 37 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4341--4372 15 2.1 15 94 0 55 56 21 0 21 1.43
6048--6077 15 2.0 15 100 0 60 40 0 0 60 0.97
6739--6777 15 2.4 17 87 12 64 41 2 0 56 1.13
6770--6815 13 3.8 12 76 18 51 30 0 6 63 1.20
7570--7830 132 2.0 132 96 0 486 29 25 19 24 1.98
12296--12343 16 3.0 16 100 0 96 50 6 31 12 1.65
27565--27595 14 2.2 14 100 0 62 35 6 0 58 1.24
31790--31831 21 2.0 21 100 0 84 42 23 0 33 1.55
40923--40954 15 2.1 15 100 0 64 6 34 46 12 1.67
43052--43092 2 21.0 2 95 5 75 51 0 0 48 1.00
47670--47713 22 2.0 21 83 12 54 29 11 0 59 1.32
59443--59478 18 2.0 18 100 0 72 55 16 11 16 1.68
60291--60335 21 2.1 21 100 0 90 26 26 15 31 1.96
63417--63487 35 2.0 35 100 0 142 36 11 22 29 1.89
63734--63785 26 2.0 26 100 0 104 61 11 7 19 1.53
67945--67984 21 1.9 21 84 0 53 32 20 7 40 1.80
69081--69120 17 2.4 17 95 0 71 65 5 10 20 1.42
69859--69907 24 2.0 25 88 4 73 32 14 10 42 1.79
75179--75209 14 2.1 15 94 5 55 77 6 6 9 1.12
76578--76614 18 2.1 18 100 0 74 21 16 10 51 1.74
86278--86313 12 3.0 12 100 0 72 41 0 33 25 1.55
86477--86518 21 2.0 21 100 0 84 33 19 4 42 1.72
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
89156--89184 15 1.9 15 100 0 58 20 13 37 27 1.91
91720--91782 33 1.9 33 93 0 108 33 9 25 31 1.88
98461--98500 12 3.3 12 86 10 55 30 5 7 57 1.48
99007--99042 16 2.2 16 100 0 72 33 13 33 19 1.91
106488--106548 31 2.0 31 96 0 113 39 22 9 27 1.86
115888--115949 30 2.0 31 96 3 117 43 3 12 40 1.59
117400--117452 23 2.2 24 96 3 99 37 11 11 39 1.77
121439--121474 18 2.0 18 100 0 72 44 11 27 16 1.82
126538--126598 31 2.0 31 96 0 113 27 9 22 39 1.86
134044--134079 16 2.2 16 100 0 72 19 33 13 33 1.91
134586--134625 12 3.3 12 86 10 55 57 7 5 30 1.48
141304--141366 33 1.9 33 93 0 108 31 25 9 33 1.88
143902--143930 15 1.9 15 100 0 58 27 37 13 20 1.91
146568--146609 21 2.0 21 100 0 84 42 4 19 33 1.72
146773--146808 12 3.0 12 100 0 72 25 33 0 41 1.55
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Tables: 1
The End!