NC_046458.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_046458.1 Paris polyphylla chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158130
Tables: 1
This is table 1 of 1 ( 64 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4087--4119 2 17.0 2 93 6 59 51 0 0 48 1.00
4086--4116 15 2.1 15 100 0 62 54 0 0 45 0.99
4594--4619 12 2.2 12 100 0 52 69 0 23 7 1.14
4782--4824 20 2.2 20 82 0 50 41 2 6 48 1.43
8727--8789 21 3.0 21 100 0 126 28 9 0 61 1.27
27732--27771 12 3.3 12 86 10 55 42 0 12 45 1.42
27779--27808 11 2.8 11 95 5 53 56 0 13 30 1.37
31396--31441 3 15.3 3 86 8 67 65 2 0 32 1.05
31399--31461 30 2.0 33 90 9 105 60 4 0 34 1.18
46810--46845 17 2.1 18 89 5 56 47 5 2 44 1.41
47723--47785 10 6.2 10 81 9 56 38 0 0 61 0.96
47724--47770 2 24.5 2 85 8 62 42 0 0 57 0.98
47777--47808 16 2.0 16 93 0 55 40 9 0 50 1.35
51016--51049 17 2.0 17 100 0 68 52 5 0 41 1.25
51053--51084 16 2.0 16 100 0 64 37 18 6 37 1.76
51152--51190 19 1.9 19 90 10 60 38 0 2 58 1.12
57434--57529 6 16.0 6 100 0 192 50 16 0 33 1.46
58792--58888 6 16.2 6 97 0 185 50 15 16 17 1.78
61262--61303 21 2.0 21 100 0 84 28 9 4 57 1.51
64387--64432 9 5.3 9 74 10 51 17 8 10 63 1.51
64422--64449 14 2.0 14 100 0 56 21 7 14 57 1.61
67698--67731 12 2.8 12 90 4 50 50 0 2 47 1.16
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
87312--87427 24 4.8 24 100 0 232 40 17 12 29 1.87
90013--90087 21 3.6 21 70 0 78 21 17 8 53 1.69
89992--90096 42 2.5 42 98 0 201 27 17 10 44 1.81
90215--90308 24 4.0 24 85 13 142 12 25 11 50 1.74
90219--90315 45 2.2 45 92 3 160 12 25 10 51 1.71
110285--110463 32 5.2 32 62 15 88 42 3 7 46 1.48
110302--110416 38 3.2 38 60 18 91 46 4 6 41 1.50
110317--110431 38 3.2 38 63 14 107 45 5 6 43 1.51
110129--110472 70 4.9 70 98 0 620 45 4 7 43 1.52
111299--111532 12 19.5 12 80 0 261 54 1 35 8 1.39
111290--111543 36 7.4 36 82 10 325 55 1 34 7 1.38
111335--111532 60 3.3 60 91 1 299 54 1 36 8 1.38
114218--114242 12 2.1 12 100 0 50 32 8 0 60 1.26
114659--114704 4 11.8 4 78 21 53 76 0 0 23 0.79
114654--114705 12 4.7 11 81 18 56 75 0 0 25 0.81
114655--114712 16 3.8 16 95 4 102 77 0 0 22 0.77
125211--125255 19 2.3 20 92 7 83 33 0 4 62 1.15
126402--126497 30 3.3 30 62 8 81 15 27 6 51 1.67
126365--126534 57 3.0 57 100 0 340 17 26 8 47 1.76
126937--126978 21 2.0 21 100 0 84 28 19 19 33 1.96
128327--128353 12 2.2 12 100 0 54 25 7 0 66 1.17
128955--129103 9 16.6 9 93 0 253 0 12 10 77 1.00
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
129549--129580 6 5.3 6 100 0 64 15 15 0 68 1.21
129577--129612 6 6.0 6 100 0 72 0 50 0 50 1.00
129549--129610 12 5.2 12 92 0 52 8 32 0 59 1.26
129549--129586 18 2.1 18 90 0 58 13 21 0 65 1.26
129571--129611 18 2.3 18 91 0 64 2 43 0 53 1.13
129612--129640 6 4.8 6 100 0 58 0 34 17 48 1.47
129705--129981 9 31.1 9 69 19 156 14 22 0 62 1.31
129697--129977 18 15.3 18 85 12 394 14 22 0 62 1.32
130066--130106 12 3.4 12 100 0 82 31 24 7 36 1.83
130829--131062 12 19.5 12 80 0 261 8 35 1 54 1.39
130829--131071 72 3.5 72 83 13 339 8 35 1 55 1.38
130829--131026 60 3.3 60 91 1 299 8 36 1 54 1.38
131898--132076 32 5.2 32 62 15 88 46 7 3 42 1.48
131889--132232 70 4.9 70 98 0 620 43 7 4 45 1.52
131944--132058 36 3.2 36 64 14 103 41 6 4 46 1.50
152053--152146 24 4.0 24 85 13 142 50 11 25 12 1.74
152046--152142 45 2.2 45 92 3 160 51 10 25 12 1.71
152274--152348 21 3.6 21 70 0 78 53 8 17 21 1.69
152265--152369 42 2.5 42 98 0 201 44 10 17 27 1.81
154934--155049 24 4.8 24 100 0 232 29 12 17 40 1.87
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!