NC_046601.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_046601.1 Blepharis ciliaris chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  149717

    Tables:   1   

    This is table  1  of  1  ( 20 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  7871--7902                         15       2.1      15          94        0         55      28   9    0    62   1.26

  14699--14735                       19       1.9      19          89        10        58      40   10   5    43   1.63

  28401--28445                       20       2.1      22          92        8         76      24   11   8    55   1.63

  35432--35483                       2        27.5     2           78        18        58      48   1    0    50   1.12

  35432--35483                       15       3.3      17          77        22        60      48   1    0    50   1.12

  35433--35483                       19       2.6      21          79        17        56      49   1    0    49   1.12

  41441--41484                       21       2.0      22          86        4         63      59   6    9    25   1.53

  51239--51272                       12       2.8      13          86        13        54      35   0    5    58   1.22

  53757--53790                       17       2.1      16          94        5         59      44   0    5    50   1.26

  59042--59085                       21       2.1      21          100       0         88      31   22   13   31   1.93

  65441--65475                       17       2.1      17          88        0         52      5    25   0    68   1.11

  66222--66262                       21       2.0      21          95        0         73      29   26   9    34   1.88

  83938--83967                       15       2.0      15          93        0         51      46   3    13   36   1.60

  86795--86860                       21       2.9      24          66        25        61      12   25   9    53   1.67

  89167--89206                       18       2.2      18          100       0         80      30   10   25   35   1.88

  104974--105034                     31       2.0      31          93        0         104     40   21   9    27   1.85

  121251--121290                     21       1.9      21          84        0         53      47   0    10   42   1.37

  126681--126741                     31       2.0      31          93        0         104     27   9    21   40   1.85

  142509--142548                     18       2.2      18          100       0         80      35   25   10   30   1.88

  147748--147777                     15       2.0      15          93        0         51      36   13   3    46   1.60
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!