NC_046695.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_046695.1 Rheum tanguticum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 161515
Tables: 1
This is table 1 of 1 ( 45 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1760--1784 12 2.1 12 100 0 50 52 16 8 24 1.70
11185--11251 22 3.0 22 81 16 68 71 1 0 26 0.94
11186--11251 24 2.7 23 77 9 69 72 1 0 25 0.93
34509--34550 16 2.8 15 82 7 50 40 11 11 35 1.79
34521--34551 16 1.9 16 93 0 53 38 12 9 38 1.77
44218--44255 20 1.9 19 85 15 51 42 0 0 57 0.98
47214--47239 13 2.0 13 100 0 52 38 7 0 53 1.30
48979--49015 16 2.3 16 95 0 65 35 2 5 56 1.36
49731--49793 2 34.0 2 74 25 59 52 3 0 44 1.17
49734--49793 9 6.8 9 74 24 56 53 3 0 43 1.17
49731--49794 13 5.0 13 90 9 89 53 3 0 43 1.16
51683--51717 16 2.2 16 89 0 52 31 0 5 62 1.18
53374--53409 18 2.0 18 88 0 54 44 8 5 41 1.58
67459--67496 12 2.9 14 84 15 62 57 0 7 34 1.28
68292--68339 8 5.9 8 79 13 53 29 2 16 52 1.56
68290--68345 24 2.3 24 93 0 94 32 1 16 50 1.55
68378--68407 15 2.0 15 93 0 51 40 10 10 40 1.72
69456--69498 22 2.0 22 85 0 59 20 13 0 65 1.27
70070--70147 38 2.0 41 82 14 101 61 2 7 28 1.37
71419--71448 13 2.4 12 94 5 51 73 0 10 16 1.09
73689--73722 17 2.0 17 100 0 68 64 0 0 35 0.94
84245--84277 11 3.2 11 87 12 52 69 0 0 30 0.88
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
84244--84298 20 2.7 20 83 13 67 65 0 0 34 0.93
84276--84300 13 1.9 13 100 0 50 60 0 0 40 0.97
92356--92398 21 2.0 21 90 0 68 34 16 20 27 1.94
96573--96608 17 2.1 17 100 0 72 30 22 5 41 1.76
109764--109829 32 2.1 32 91 0 105 42 22 7 27 1.80
111437--111494 26 2.3 24 80 16 64 63 0 6 29 1.20
111453--111494 20 2.1 20 86 8 59 66 0 7 26 1.17
112285--112348 21 3.0 21 82 8 76 28 12 26 32 1.93
113354--113398 12 3.8 12 90 0 63 42 8 28 20 1.82
113354--113406 12 4.4 12 76 9 54 45 9 28 16 1.79
119872--119910 19 2.1 19 85 0 51 51 10 5 33 1.58
120444--120481 15 2.4 16 87 12 53 78 0 7 13 0.94
120432--120481 20 2.3 21 81 18 59 76 0 8 16 1.02
120799--121770 486 2.0 486 99 0 1935 35 15 14 34 1.87
134823--134875 12 4.4 12 85 0 61 20 30 7 41 1.80
135873--135928 21 2.7 21 88 0 76 35 26 10 26 1.89
135882--135936 21 2.6 20 86 11 74 32 27 12 27 1.93
136675--136732 26 2.2 26 81 6 73 37 10 1 50 1.47
136753--136794 20 2.1 20 86 8 59 26 7 0 66 1.17
136762--136797 17 2.1 17 89 0 54 27 5 0 66 1.13
136753--136810 26 2.3 24 80 16 64 29 6 0 63 1.20
138418--138483 32 2.1 32 91 0 105 27 7 22 42 1.80
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
155832--155874 21 2.0 21 90 0 68 27 20 16 34 1.94
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Tables: 1
The End!