NC_046700.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_046700.1 Toxicodendron vernicifluum cultivar Dahongpao chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159571
Tables: 1
This is table 1 of 1 ( 47 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
254--285 10 3.4 10 83 16 50 21 9 0 68 1.17
257--290 8 4.0 8 85 14 50 23 11 0 64 1.26
254--290 18 2.1 18 100 0 74 24 10 0 64 1.25
3797--3834 20 1.9 20 100 0 76 31 7 23 36 1.84
3960--4000 20 2.0 20 95 0 73 24 0 17 58 1.38
4800--4830 16 1.9 16 93 0 53 45 12 0 41 1.42
5060--5090 15 2.1 15 93 0 53 54 12 9 22 1.67
15984--16014 14 2.2 14 94 0 53 16 3 12 67 1.35
19069--19113 21 2.1 21 100 0 90 55 4 4 35 1.40
39228--39252 13 1.9 13 100 0 50 16 16 28 40 1.89
44911--44947 12 3.1 12 100 0 74 32 8 8 51 1.61
48694--48747 27 2.0 27 100 0 108 22 14 7 55 1.64
48998--49022 12 2.1 12 100 0 50 52 8 8 32 1.60
49173--49202 15 2.0 15 93 0 51 33 6 3 56 1.42
53685--53714 15 2.0 15 100 0 60 40 0 13 46 1.43
59130--59162 12 2.5 13 85 14 50 54 15 3 27 1.55
61711--61737 13 2.1 13 100 0 54 40 7 7 44 1.60
63446--63488 12 3.6 11 79 14 50 37 20 2 39 1.66
66010--66048 22 1.9 20 85 15 53 58 2 33 5 1.33
68065--68107 21 2.0 21 90 0 68 37 18 25 18 1.94
68485--68524 19 2.1 19 100 0 80 30 0 5 65 1.14
70936--70969 15 2.3 15 89 0 50 38 2 26 32 1.71
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
70986--71024 21 1.9 21 94 5 71 30 25 10 33 1.89
73158--73209 27 1.9 27 96 0 95 61 3 7 26 1.41
75082--75110 13 2.2 13 100 0 58 48 0 13 37 1.43
77888--77913 13 2.0 13 100 0 52 15 15 30 38 1.88
83691--83726 17 2.1 17 100 0 72 41 11 0 47 1.39
92199--92252 24 2.2 25 90 3 83 11 24 7 57 1.58
94617--94712 18 5.3 18 96 0 174 30 10 26 33 1.90
102452--102486 17 2.1 17 94 0 61 5 8 0 85 0.73
102980--103017 18 2.1 18 100 0 76 21 10 5 63 1.46
107552--107623 38 1.9 37 94 2 126 31 22 25 20 1.98
111150--111210 31 2.0 31 96 0 113 39 22 9 27 1.86
112750--112785 18 2.0 18 94 0 63 55 13 8 22 1.65
114631--114667 18 2.1 18 94 0 65 24 10 8 56 1.60
116343--116382 20 2.0 20 100 0 80 40 10 15 35 1.80
116659--116704 23 2.0 23 100 0 92 47 13 13 26 1.78
117108--117146 17 2.3 17 95 0 69 64 5 10 20 1.44
118417--118448 16 2.0 16 100 0 64 31 6 12 50 1.65
119047--119084 20 2.0 20 85 15 53 21 13 13 52 1.73
134170--134205 18 2.0 18 94 0 63 22 8 13 55 1.65
135745--135805 31 2.0 31 96 0 113 27 9 22 39 1.86
139332--139403 38 1.9 37 94 2 126 20 25 22 31 1.98
143938--143975 18 2.1 18 100 0 76 63 5 10 21 1.46
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
144469--144503 17 2.1 17 94 0 61 85 0 8 5 0.73
152243--152338 18 5.3 18 96 0 174 33 26 10 30 1.90
154703--154756 24 2.2 25 90 3 83 57 7 24 11 1.58
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Tables: 1
The End!