NC_046758.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_046758.1 Tribulus terrestris chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158184
Tables: 1
This is table 1 of 1 ( 63 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
150--180 15 2.1 15 100 0 62 54 6 6 32 1.51
1857--1888 16 1.9 17 93 6 57 40 9 12 37 1.75
4829--4864 16 2.2 16 100 0 72 61 0 13 25 1.33
8090--8130 21 1.9 22 90 5 66 53 0 2 43 1.13
9213--9241 14 2.1 14 100 0 58 20 6 0 72 1.07
14749--14780 16 2.0 16 100 0 64 56 0 12 31 1.37
29840--29878 19 2.1 19 100 0 78 64 10 10 15 1.50
29843--29885 19 2.3 19 87 0 59 65 9 9 16 1.47
31008--31032 13 1.9 13 100 0 50 48 12 8 32 1.69
33887--33926 19 2.0 20 90 4 64 25 22 10 42 1.84
35369--35401 16 2.1 16 100 0 66 42 15 12 30 1.83
38459--38488 11 2.9 10 90 9 51 60 0 16 23 1.36
39351--39394 22 2.0 22 86 0 61 31 6 9 52 1.59
39517--39550 17 2.0 17 100 0 68 41 0 0 58 0.98
39546--39581 17 2.1 17 89 0 54 61 0 2 36 1.11
39675--39726 27 1.9 27 96 0 95 59 0 7 32 1.26
39821--39865 21 2.1 21 87 0 63 48 2 15 33 1.57
49398--49447 18 2.7 18 82 17 59 34 0 2 64 1.05
49397--49445 16 3.1 16 85 8 57 34 0 2 63 1.06
49403--49450 16 2.9 17 87 6 71 35 0 4 60 1.16
49497--49556 12 4.8 12 78 11 57 65 0 6 28 1.18
49495--49561 27 2.4 28 75 9 66 64 0 5 29 1.17
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
49851--49885 17 2.1 17 88 0 52 40 20 2 37 1.67
49969--50020 25 2.3 22 81 18 70 55 5 5 32 1.47
49976--50026 25 2.0 25 100 0 102 54 7 3 33 1.47
50111--50146 18 2.0 18 88 0 54 41 2 16 38 1.63
51399--51430 14 2.3 14 94 0 55 50 3 6 40 1.43
51911--52052 73 2.0 69 94 5 248 25 23 26 23 2.00
52684--52725 21 2.0 21 100 0 84 52 9 9 28 1.65
54693--54722 15 2.0 15 100 0 60 13 6 13 66 1.43
55682--55719 10 4.1 10 80 19 55 57 10 10 21 1.61
55683--55716 17 2.0 17 100 0 68 58 11 11 17 1.62
55964--56003 21 1.9 21 89 0 62 15 7 2 75 1.14
55955--56013 24 2.3 26 83 11 70 11 10 1 76 1.10
56113--56145 17 1.9 17 93 0 57 30 15 18 36 1.91
63432--63458 13 2.1 13 100 0 54 44 7 14 33 1.73
64769--64813 17 2.8 16 80 6 54 75 8 4 11 1.17
64769--64807 16 2.3 16 86 8 51 82 5 5 7 0.96
64788--64851 32 2.0 32 100 0 128 56 21 6 15 1.62
65585--65609 12 2.1 12 100 0 50 16 32 0 52 1.44
67089--67118 12 2.5 12 94 0 51 16 33 16 33 1.92
69130--69181 17 3.1 17 100 0 104 48 11 5 34 1.63
69341--69369 15 1.9 15 100 0 58 13 0 17 68 1.20
69769--69808 20 2.0 20 100 0 80 20 10 5 65 1.42
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
72788--72817 15 2.0 15 100 0 60 26 6 0 66 1.16
76291--76318 13 2.2 13 100 0 56 25 7 0 67 1.15
84986--85018 17 1.9 17 100 0 66 42 6 3 48 1.43
93012--93063 21 2.5 21 90 0 86 9 17 9 63 1.50
95453--95514 18 3.4 18 95 0 106 27 16 24 32 1.96
97857--97884 14 2.0 14 100 0 56 28 21 7 42 1.79
102904--102932 15 1.9 15 100 0 58 6 6 0 86 0.72
103326--103358 17 1.9 17 100 0 66 30 3 30 36 1.73
108052--108125 38 2.0 36 94 5 130 35 17 28 18 1.94
116501--116539 20 2.0 20 85 10 53 56 23 0 20 1.42
117359--117388 14 2.1 14 100 0 60 53 6 13 26 1.64
118225--118250 13 2.0 13 100 0 52 46 7 15 30 1.74
122520--122548 14 2.1 14 100 0 58 48 6 0 44 1.29
138938--139011 38 2.0 36 94 5 130 18 28 17 35 1.94
143705--143737 17 1.9 17 100 0 66 36 30 3 30 1.73
144131--144159 15 1.9 15 100 0 58 86 0 6 6 0.72
149179--149206 14 2.0 14 100 0 56 42 7 21 28 1.79
151549--151610 18 3.4 18 95 0 106 32 24 16 27 1.96
154000--154051 21 2.5 21 90 0 86 63 9 17 9 1.50
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Tables: 1
The End!