NC_046766.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_046766.1 Aristolochia manshuriensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160182
Tables: 1
This is table 1 of 1 ( 74 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1371--1416 23 2.0 23 100 0 92 43 0 21 34 1.53
4160--4260 21 4.7 21 70 23 77 61 0 1 36 1.07
4217--4262 15 3.2 15 78 12 60 67 0 0 32 0.91
4192--4249 11 5.3 11 74 14 57 56 0 0 43 0.99
4201--4266 32 2.1 32 82 5 80 65 0 0 34 0.93
6085--6149 12 5.9 12 70 26 63 36 6 6 50 1.52
6086--6156 18 3.6 19 77 22 83 38 4 7 50 1.49
8253--8280 14 2.0 14 100 0 56 14 7 21 57 1.61
9611--9645 16 2.2 16 89 0 52 51 0 0 48 1.00
9606--9674 27 2.6 26 82 8 77 47 2 1 47 1.25
14119--14180 17 3.8 17 76 8 74 61 0 0 38 0.96
14114--14203 36 2.4 36 82 15 112 63 0 1 35 1.02
14121--14193 17 4.2 17 75 19 69 64 0 0 35 0.94
14117--14186 2 37.5 2 73 13 60 61 0 0 38 0.96
23345--23370 13 2.0 13 100 0 52 7 15 0 76 0.99
27568--27612 19 2.4 19 92 3 74 42 6 24 26 1.79
29368--29402 17 2.1 17 88 0 52 31 8 0 60 1.27
38817--38861 2 21.0 2 86 13 63 46 2 4 46 1.35
46278--46322 21 2.1 21 100 0 90 37 8 26 26 1.86
46801--46893 5 19.2 5 73 18 81 61 0 0 38 0.96
46801--46963 19 8.7 18 74 12 82 64 0 0 35 0.94
46802--46930 2 70.5 2 66 17 57 60 0 0 39 0.97
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
46801--46955 32 4.9 32 76 13 126 63 0 0 36 0.95
47565--47598 17 2.0 17 100 0 68 41 11 23 23 1.87
49529--49576 14 3.4 14 88 11 64 35 2 0 62 1.07
49571--49602 10 3.3 10 95 4 57 62 0 0 37 0.95
49591--49639 19 2.8 18 76 11 57 53 4 0 42 1.20
49585--49648 21 3.2 21 76 10 62 53 4 0 42 1.22
49724--49816 10 9.2 10 78 18 95 40 0 0 59 0.98
49733--49825 3 31.0 3 76 20 88 38 0 1 60 1.04
49733--49819 18 5.2 18 86 13 116 39 0 0 60 0.97
49725--49843 28 4.4 27 77 19 108 40 0 2 57 1.12
49731--49825 5 17.6 5 79 21 79 38 0 1 60 1.04
49920--49948 14 2.1 14 100 0 58 34 0 6 58 1.25
51862--51906 22 2.0 22 91 0 72 17 4 4 73 1.17
54737--54776 20 2.0 20 100 0 80 35 25 0 40 1.56
63317--63359 18 2.4 17 81 14 50 44 4 2 48 1.36
63362--63395 17 2.0 17 100 0 68 64 0 11 23 1.26
63644--63690 21 2.2 21 100 0 94 40 10 0 48 1.38
63655--63726 36 2.0 36 89 5 110 44 9 0 45 1.36
63676--63705 15 2.0 15 100 0 60 40 13 0 46 1.43
63652--63689 10 3.7 10 86 6 58 44 10 0 44 1.38
64967--65001 17 2.1 17 100 0 70 48 11 11 28 1.74
70288--70315 14 2.0 14 100 0 56 35 0 35 28 1.58
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
71946--71979 17 2.0 17 100 0 68 23 0 23 52 1.47
72576--72612 18 2.0 19 89 5 58 72 0 2 24 0.97
72644--72689 9 4.7 10 78 21 53 52 0 0 47 1.00
72644--72699 21 2.7 23 84 13 68 51 0 0 48 1.00
72734--72792 20 2.6 22 82 17 77 44 5 1 49 1.34
72745--72796 20 2.6 20 96 0 95 42 3 1 51 1.31
72911--72954 21 2.1 21 86 0 61 31 27 11 29 1.91
73477--73508 16 2.0 16 100 0 64 37 6 25 31 1.81
74033--74082 24 2.1 24 88 0 73 52 14 6 28 1.65
74040--74090 24 2.1 24 100 0 102 50 7 7 33 1.60
74133--74159 11 2.5 11 100 0 54 74 0 7 18 1.05
84513--84561 24 2.0 24 92 0 80 28 32 14 24 1.94
90235--90277 21 2.0 21 95 0 77 27 18 16 37 1.92
94334--94422 21 4.1 21 88 5 117 13 25 10 50 1.73
96785--96851 24 3.6 18 74 25 59 32 5 23 37 1.79
96792--96844 24 2.2 24 100 0 106 33 7 24 33 1.84
104612--104641 12 2.5 12 100 0 60 26 10 0 63 1.26
104679--104770 32 3.2 32 60 28 78 8 26 0 65 1.21
104679--104787 54 2.0 54 100 0 218 9 29 0 61 1.27
117653--117693 20 2.0 20 100 0 82 46 4 14 34 1.66
120561--120597 18 2.1 18 100 0 74 51 5 0 43 1.24
134018--134052 18 1.9 18 94 0 61 31 11 11 45 1.76
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
144899--145007 54 2.0 54 100 0 218 61 0 29 9 1.27
144926--145009 26 3.2 25 67 17 71 63 0 28 8 1.23
144916--145031 54 2.2 52 86 7 157 68 0 22 8 1.22
145045--145074 12 2.5 12 100 0 60 63 0 10 26 1.26
152842--152894 24 2.2 24 100 0 106 33 24 7 33 1.84
152835--152898 18 3.2 19 73 26 53 35 25 6 32 1.81
155264--155352 21 4.1 21 88 5 117 50 10 25 13 1.73
159409--159451 21 2.0 21 95 0 77 37 16 18 27 1.92
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Tables: 1
The End!