NC_046774.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_046774.1 Bupleurum chinense chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155545
Tables: 1
This is table 1 of 1 ( 26 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4593--4627 12 3.0 12 91 4 54 68 8 11 11 1.39
7463--7493 13 2.5 12 90 10 53 45 19 0 35 1.51
14111--14140 14 2.1 14 100 0 60 53 0 6 40 1.27
16150--16189 13 3.1 13 96 0 71 35 7 0 57 1.27
21288--21385 49 2.0 49 85 0 133 30 15 23 30 1.95
29142--29174 16 2.1 16 94 0 57 33 9 12 45 1.73
47481--47522 22 1.9 22 90 9 68 35 11 0 52 1.38
53357--53388 16 2.0 16 100 0 64 43 6 12 37 1.68
60312--60378 33 2.0 33 100 0 134 38 11 14 34 1.84
69302--69342 21 2.0 21 90 0 64 29 24 9 36 1.87
69772--69805 11 3.2 10 88 12 50 20 2 0 76 0.92
76797--76824 14 2.0 14 100 0 56 0 28 7 64 1.20
89657--89724 21 3.2 21 77 8 75 11 22 8 57 1.61
90831--90875 15 3.0 15 96 0 81 26 33 15 24 1.95
92101--92153 9 5.9 9 72 0 52 30 3 28 37 1.75
92108--92166 18 3.3 18 95 0 100 30 6 28 33 1.83
99518--99543 13 2.0 13 100 0 52 15 7 7 69 1.35
108227--108292 32 2.1 32 97 0 123 40 24 9 25 1.84
113423--113466 20 2.2 20 88 8 63 54 29 0 15 1.42
132684--132749 32 2.1 32 97 0 123 25 9 24 40 1.84
141433--141458 13 2.0 13 100 0 52 69 7 7 15 1.35
148810--148868 18 3.3 18 95 0 100 33 28 6 30 1.83
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
148823--148875 9 5.9 9 72 0 52 37 28 3 30 1.75
150101--150145 15 3.0 15 96 0 81 24 15 33 26 1.95
151270--151323 21 2.6 21 82 11 74 59 11 20 9 1.59
151253--151322 21 3.4 19 72 16 59 57 8 22 11 1.61
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Tables: 1
The End!