NC_046776.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_046776.1 Epimedium brevicornu chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156947
Tables: 1
This is table 1 of 1 ( 29 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
41474--41504 15 2.1 15 93 0 53 9 25 41 22 1.84
52679--52705 14 1.9 14 100 0 54 70 0 7 22 1.12
72191--72282 45 2.0 45 97 0 175 35 15 20 28 1.93
74322--74472 48 2.9 53 79 13 177 29 18 15 36 1.92
74375--74472 48 2.0 48 96 0 178 31 20 14 33 1.92
82093--82139 24 2.0 24 86 0 67 25 36 14 23 1.93
87232--87257 13 2.0 13 100 0 52 23 7 7 61 1.49
89344--89391 14 3.5 13 88 5 60 62 4 12 20 1.46
89724--89790 33 2.0 33 88 0 98 31 17 29 20 1.96
94705--94752 9 5.3 9 89 0 69 33 0 35 31 1.58
94701--94752 18 2.9 18 82 0 77 34 0 34 30 1.58
94701--94754 27 2.0 27 96 0 99 33 0 35 31 1.58
110976--111006 15 2.1 15 100 0 62 61 0 32 6 1.21
113823--113877 12 4.6 12 93 0 83 45 12 34 7 1.70
113885--114023 66 2.1 67 91 4 226 43 18 20 17 1.89
113978--114052 24 3.3 21 66 20 60 44 17 20 18 1.88
113988--114063 24 3.2 24 67 14 66 46 15 21 17 1.84
113978--114071 48 2.0 48 97 0 179 44 17 20 18 1.87
130404--130442 18 2.2 18 86 9 53 35 12 7 43 1.72
131411--131504 48 2.0 48 97 0 179 18 20 17 44 1.87
131459--131597 66 2.1 67 91 4 226 17 20 18 43 1.89
131605--131659 12 4.6 12 93 0 83 7 34 12 45 1.70
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
131887--131963 33 2.3 33 84 4 93 24 24 7 42 1.81
134476--134506 15 2.1 15 100 0 62 6 32 0 61 1.21
150734--150781 9 5.3 9 89 0 69 29 35 0 35 1.58
150730--150781 18 2.9 18 82 0 77 30 34 0 34 1.58
150728--150781 27 2.0 27 96 0 99 31 35 0 33 1.58
155692--155758 33 2.0 33 88 0 98 20 29 17 31 1.96
156091--156138 14 3.5 13 86 8 60 20 12 4 62 1.46
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Tables: 1
The End!