NC_046791.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_046791.1 Desmodium styracifolium chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 149155
Tables: 1
This is table 1 of 1 ( 50 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
10424--10455 12 2.7 12 95 0 55 43 18 0 37 1.51
14716--14760 15 3.0 15 86 0 54 51 8 0 40 1.33
14773--14834 16 3.8 16 87 8 81 33 12 4 48 1.63
14977--15020 13 3.3 14 78 9 56 38 6 2 52 1.41
14975--15025 27 2.0 25 88 7 75 35 7 1 54 1.40
15115--15150 12 2.8 12 91 8 54 63 13 0 22 1.29
24831--24863 17 1.9 17 93 0 57 30 9 0 60 1.27
24830--24866 17 2.2 17 85 0 56 27 8 0 64 1.21
24902--24941 19 2.1 19 100 0 80 50 0 15 35 1.44
28789--28814 13 2.0 13 100 0 52 38 0 23 38 1.55
30010--30049 18 2.4 16 80 15 53 55 2 2 40 1.27
31567--31607 21 2.0 21 100 0 82 63 4 7 24 1.40
33755--33792 19 2.0 19 89 0 58 42 13 10 34 1.78
45420--45454 17 2.1 17 100 0 70 48 5 17 28 1.69
47697--47737 13 3.1 13 92 3 64 43 0 4 51 1.23
52136--52172 19 1.9 19 94 0 65 51 0 0 48 1.00
52139--52176 10 3.6 11 86 10 53 52 0 0 47 1.00
53923--53957 16 2.2 16 100 0 70 17 17 0 65 1.27
55350--55381 15 2.2 15 94 5 57 6 0 12 81 0.87
57470--57515 23 2.0 23 100 0 92 52 8 8 30 1.62
61307--61336 14 2.1 14 100 0 60 53 0 6 40 1.27
61384--61447 21 3.0 21 100 0 128 23 14 4 57 1.55
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
61392--61451 11 5.6 11 70 21 56 25 13 3 58 1.50
64410--64439 14 2.1 14 93 0 51 23 13 3 60 1.48
64431--64462 16 2.0 16 100 0 64 43 12 6 37 1.68
64434--64477 16 2.6 17 85 3 54 50 9 6 34 1.61
77467--77514 15 3.3 15 77 5 55 14 10 0 75 1.06
77474--77517 22 1.9 24 90 9 74 15 9 0 75 1.05
78593--78645 17 3.1 17 94 2 88 20 13 0 66 1.25
81952--82036 17 5.0 17 100 0 170 47 11 0 41 1.40
88143--88184 21 2.0 21 100 0 84 38 4 28 28 1.77
89292--89383 18 5.1 18 94 0 166 33 4 28 33 1.77
89295--89387 9 10.3 9 84 0 123 33 4 30 32 1.77
96343--96368 13 2.0 13 100 0 52 23 7 7 61 1.49
96673--96697 12 2.1 12 100 0 50 44 8 8 40 1.63
107634--107673 21 1.9 21 89 0 62 55 5 2 37 1.35
110293--110324 15 2.1 15 100 0 64 34 0 18 46 1.49
114130--114159 13 2.2 13 94 5 51 26 0 0 73 0.84
117982--118031 15 3.3 16 78 13 61 48 4 2 46 1.32
120240--120266 13 2.1 13 100 0 54 14 7 7 70 1.32
121665--121745 42 2.0 41 83 9 103 30 7 6 55 1.52
121853--121891 19 2.1 19 100 0 78 51 0 5 43 1.24
121856--121899 19 2.4 19 88 7 65 52 0 6 40 1.28
121883--121914 14 2.4 14 94 5 57 50 0 12 37 1.41
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
121907--121964 25 2.3 24 88 5 80 46 5 5 43 1.48
134929--134953 12 2.1 12 100 0 50 40 8 8 44 1.63
135258--135283 13 2.0 13 100 0 52 61 7 7 23 1.49
142239--142331 9 10.3 9 84 0 123 32 30 4 33 1.77
142243--142334 18 5.1 18 94 0 166 33 28 4 33 1.77
143442--143483 21 2.0 21 100 0 84 28 28 4 38 1.77
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!