NC_046829.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_046829.1 Chelidonium majus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159734
Tables: 1
This is table 1 of 1 ( 29 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4737--4776 21 1.9 21 85 10 55 62 7 7 22 1.47
6590--6615 13 2.0 13 100 0 52 38 23 0 38 1.55
6801--6838 19 2.0 19 100 0 76 47 0 31 21 1.51
34279--34307 13 2.2 13 100 0 58 62 0 6 31 1.22
34266--34313 17 2.8 17 79 14 55 64 0 4 31 1.12
52852--52889 18 2.1 18 100 0 76 23 10 15 50 1.75
53049--53079 16 1.9 16 93 0 53 48 6 0 45 1.28
59535--59564 15 2.0 15 100 0 60 40 13 13 33 1.83
62286--62319 15 2.2 16 89 5 52 44 8 5 41 1.60
62793--62840 16 3.0 16 100 0 96 31 18 12 37 1.88
71251--71291 21 2.0 21 95 0 73 29 26 9 34 1.88
77597--77641 22 2.0 22 100 0 90 26 22 24 26 2.00
82749--82795 24 2.0 24 95 0 85 25 31 14 27 1.95
86866--86913 24 2.0 24 95 0 87 16 35 12 35 1.87
86897--87011 60 1.9 60 96 0 212 26 33 8 31 1.87
89916--89945 15 2.0 15 100 0 60 53 13 20 13 1.72
92518--92606 21 4.1 21 91 5 126 13 24 10 51 1.71
95023--95061 18 2.2 18 100 0 78 33 5 25 35 1.78
95028--95068 18 2.3 18 91 0 64 36 7 24 31 1.83
111501--111562 32 1.9 32 96 0 115 40 22 9 27 1.85
111854--111879 12 2.2 12 100 0 52 34 15 0 50 1.45
117210--117249 20 2.0 20 95 0 71 30 12 15 42 1.83
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
123827--123865 13 3.0 13 100 0 78 38 15 15 30 1.88
130566--130595 15 2.0 15 93 0 51 33 16 6 43 1.74
135552--135577 12 2.2 12 100 0 52 50 0 15 34 1.45
135869--135930 32 1.9 32 96 0 115 27 9 22 40 1.85
152370--152408 18 2.2 18 100 0 78 35 25 5 33 1.78
154825--154913 21 4.1 21 91 5 126 51 10 24 13 1.71
157486--157515 15 2.0 15 100 0 60 13 20 13 53 1.72
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!