NC_046866.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_046866.1 Trichosanthes tricuspidata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157459
Tables: 1
This is table 1 of 1 ( 29 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1502--1539 19 2.0 19 100 0 76 21 5 5 68 1.29
4626--4692 17 3.9 17 83 9 91 52 1 0 46 1.09
9029--9089 16 3.7 16 82 8 77 45 4 4 44 1.46
9034--9089 18 3.2 17 87 5 69 46 5 3 44 1.43
9137--9175 9 4.0 9 81 18 51 51 0 12 35 1.40
9136--9177 21 2.0 21 100 0 84 47 0 14 38 1.44
10504--10528 9 2.8 9 100 0 50 44 0 0 56 0.99
29953--29978 12 2.2 12 100 0 52 50 7 7 34 1.60
30072--30107 17 2.1 17 89 0 54 44 2 13 38 1.59
30429--30475 18 2.7 18 83 3 60 42 21 8 27 1.81
34599--34628 15 2.0 15 93 0 51 56 6 23 13 1.60
34622--34666 20 2.2 21 92 4 74 40 11 4 44 1.60
37745--37773 14 2.1 14 100 0 58 27 0 6 65 1.18
38519--38557 20 1.9 21 94 5 71 58 2 5 33 1.33
38702--38753 13 3.8 13 73 14 50 36 17 15 30 1.91
46519--46550 16 2.0 16 100 0 64 25 6 18 50 1.70
61961--61994 12 3.0 12 91 8 54 61 8 0 29 1.26
67567--67595 14 2.1 14 100 0 58 44 0 6 48 1.29
83967--83991 8 3.1 8 100 0 50 60 0 12 28 1.32
91154--91236 21 3.7 23 75 18 77 13 22 9 54 1.68
91176--91243 21 3.2 21 82 0 82 11 22 7 58 1.57
93602--93658 18 3.2 18 94 0 105 31 5 28 35 1.79
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
93602--93658 9 6.3 9 72 0 51 31 5 28 35 1.79
109827--109892 32 2.1 32 97 0 123 40 24 9 25 1.84
116593--116642 26 1.9 26 84 8 66 64 4 12 20 1.43
133981--134046 32 2.1 32 97 0 123 25 9 24 40 1.84
150215--150271 18 3.2 18 94 0 105 35 28 5 31 1.79
150215--150271 9 6.3 9 72 0 51 35 28 5 31 1.79
152631--152719 21 4.1 21 81 5 81 56 8 22 12 1.64
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Tables: 1
The End!