NC_046879.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_046879.1 Cuminum cyminum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157839
Tables: 1
This is table 1 of 1 ( 23 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
10073--10109 2 19.5 2 86 10 51 43 0 0 56 0.99
10073--10109 13 2.9 13 92 4 58 43 0 0 56 0.99
27931--28043 28 4.0 28 98 0 217 36 13 17 32 1.89
47190--47223 17 2.1 16 88 5 50 26 11 8 52 1.67
47644--47700 23 2.4 23 82 8 71 59 14 12 14 1.61
62069--62095 14 1.9 14 100 0 54 40 14 7 37 1.74
63658--63696 7 5.4 7 81 6 51 48 2 0 48 1.15
64090--64140 25 2.0 25 100 0 102 37 23 7 31 1.83
67643--67692 24 2.1 24 92 0 82 48 8 4 40 1.51
67783--67823 21 2.0 21 95 0 73 29 26 9 34 1.88
70002--70043 20 2.1 20 86 8 59 76 0 11 11 1.03
70003--70041 13 3.0 13 80 0 51 79 0 7 12 0.93
71072--71111 16 2.5 16 100 0 80 40 5 5 50 1.46
74034--74070 19 1.9 19 100 0 74 54 16 8 21 1.68
88105--88193 21 4.2 21 84 5 117 12 22 8 56 1.64
89301--89359 15 3.9 15 95 0 100 27 33 13 25 1.93
90576--90677 18 5.7 18 97 0 177 28 5 30 35 1.81
115855--115881 12 2.2 12 100 0 54 22 0 7 70 1.12
122691--122719 14 2.0 15 93 6 51 24 6 6 62 1.45
128547--128577 15 2.1 15 100 0 62 12 19 6 61 1.53
151090--151191 18 5.7 18 97 0 177 35 30 5 28 1.81
152408--152466 15 3.9 15 95 0 100 25 13 33 27 1.93
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
153574--153662 21 4.2 21 84 5 117 56 8 22 12 1.64
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Tables: 1
The End!