NC_046937.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_046937.1 Liquidambar orientalis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160771
Tables: 1
This is table 1 of 1 ( 51 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4411--4447 19 1.9 19 88 0 56 72 8 8 10 1.27
5236--5271 10 3.9 10 79 20 51 19 0 5 75 1.00
5212--5271 17 3.1 20 77 15 63 16 1 6 75 1.10
5232--5271 17 2.4 17 95 4 73 17 0 5 77 0.94
6585--6616 15 2.1 15 94 0 55 62 12 3 21 1.43
9544--9578 15 2.3 15 100 0 70 14 22 0 62 1.31
11317--11351 15 2.3 15 90 0 52 60 0 0 40 0.97
15587--15613 13 2.1 13 100 0 54 40 14 22 22 1.90
15806--15836 15 2.1 15 100 0 62 32 19 0 48 1.49
29011--29062 25 2.1 25 100 0 104 44 11 15 28 1.81
31271--31300 15 2.0 15 93 0 51 40 23 3 33 1.71
33682--33763 5 16.2 5 73 20 55 52 0 0 47 1.00
33675--33751 19 4.1 20 79 14 92 49 0 0 50 1.00
33669--33753 21 3.8 22 83 14 79 49 0 0 50 1.00
33681--33767 21 4.2 21 87 8 99 51 0 0 48 1.00
33768--33876 26 4.2 26 82 13 111 65 0 9 24 1.28
33768--33876 52 2.1 52 89 3 166 65 0 9 24 1.28
33789--33876 26 3.4 26 96 0 167 65 1 6 26 1.24
34421--34450 13 2.2 14 94 5 53 43 0 10 46 1.37
34680--34707 14 2.0 14 100 0 56 28 0 0 71 0.86
34761--34785 13 1.9 13 100 0 50 56 0 8 36 1.29
35507--35555 18 2.7 19 87 12 61 69 0 14 16 1.19
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
39482--39509 14 2.0 14 100 0 56 57 0 0 42 0.99
45928--45953 12 2.2 12 100 0 52 42 7 7 42 1.62
50824--50866 21 2.0 21 100 0 86 51 0 34 13 1.42
72602--72642 21 2.0 21 95 0 73 29 26 9 34 1.88
74225--74257 16 2.1 16 100 0 66 24 33 0 42 1.55
83922--83967 24 1.9 24 86 0 65 23 32 17 26 1.97
87141--87183 7 5.9 7 78 10 50 23 4 13 58 1.55
87141--87183 15 2.9 15 96 0 77 23 4 13 58 1.55
93659--93747 21 4.1 21 81 5 90 12 23 10 53 1.68
95714--95743 15 2.0 15 100 0 60 26 13 13 46 1.80
96134--96193 18 3.3 18 100 0 120 28 11 26 33 1.91
104292--104329 18 2.1 18 95 0 67 23 7 5 63 1.42
104414--104468 27 2.0 27 100 0 110 21 18 52 7 1.69
108952--109026 38 2.0 37 97 2 141 32 24 25 18 1.97
112534--112695 32 5.1 32 99 0 315 40 24 9 25 1.85
113842--113893 26 2.0 26 100 0 104 23 23 7 46 1.78
118915--118943 13 2.1 14 93 6 51 62 0 0 37 0.96
119163--119187 12 2.1 12 100 0 50 40 8 8 44 1.63
119207--119246 20 2.0 20 100 0 80 50 10 25 15 1.74
119416--119449 17 1.9 18 88 5 52 29 14 0 55 1.40
126875--126901 14 1.9 14 100 0 54 37 7 18 37 1.79
135761--135812 26 2.0 26 100 0 104 46 7 23 23 1.78
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
136959--137120 32 5.1 32 99 0 315 25 9 24 40 1.85
140628--140702 38 2.0 37 97 2 141 18 25 24 32 1.97
145186--145240 27 2.0 27 100 0 110 7 52 18 21 1.69
145325--145362 18 2.1 18 95 0 67 63 5 7 23 1.42
153461--153520 18 3.3 18 100 0 120 33 26 11 28 1.91
153911--153940 15 2.0 15 100 0 60 46 13 13 26 1.80
155907--155995 21 4.1 21 81 5 90 53 10 23 12 1.68
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Tables: 1
The End!