NC_046941.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_046941.1 Sinomenium acutum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 162968
Tables: 1
This is table 1 of 1 ( 91 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
280--347 17 4.0 17 94 3 93 60 11 0 27 1.32
280--347 34 2.0 34 91 5 111 60 11 0 27 1.32
2162--2209 8 5.6 8 76 13 51 25 2 0 72 0.95
2159--2206 15 3.1 15 85 8 60 22 4 0 72 1.01
2170--2206 12 3.0 12 92 4 56 24 2 0 72 0.97
2166--2217 20 2.7 20 85 8 63 25 3 0 71 1.03
2162--2214 27 2.0 27 85 7 72 24 3 0 71 1.02
2179--2245 17 4.0 17 72 12 59 34 2 1 61 1.20
2281--2306 13 2.0 13 100 0 52 23 7 38 30 1.83
5178--5219 21 2.0 21 100 0 84 52 14 4 28 1.62
5671--5707 17 2.2 16 95 4 65 48 10 13 27 1.75
9895--9978 28 3.0 28 98 0 159 32 15 3 48 1.62
29409--29452 21 2.0 22 82 8 54 52 2 20 25 1.58
30184--30221 19 2.0 19 94 0 67 28 13 10 47 1.76
30349--30374 13 2.0 13 100 0 52 61 0 15 23 1.33
31852--31906 19 3.0 17 80 19 74 45 5 1 47 1.36
31854--31908 21 2.6 21 94 2 92 43 3 3 49 1.37
34414--34443 14 2.1 14 93 0 51 13 13 10 63 1.52
34464--34517 25 2.2 25 89 0 81 37 12 0 50 1.41
34501--34558 29 2.1 28 87 6 82 41 5 1 51 1.34
34506--34567 29 2.1 29 82 5 72 43 4 3 48 1.40
34543--34587 18 2.4 19 81 11 56 44 8 6 40 1.62
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
34791--34818 14 2.0 14 100 0 56 50 0 14 35 1.43
35139--35189 22 2.4 22 96 3 95 35 17 23 23 1.95
36245--36287 18 2.4 18 80 3 52 44 9 4 41 1.57
36301--36352 26 2.0 25 96 3 95 42 3 3 50 1.39
40401--40451 11 4.8 11 73 9 52 39 3 3 52 1.38
40396--40469 31 2.3 33 90 6 116 41 2 5 50 1.39
40396--40481 34 2.6 33 83 5 95 43 2 5 48 1.39
40444--40499 28 1.9 30 82 7 71 44 5 5 44 1.49
40486--40532 23 2.1 22 92 4 76 48 14 4 31 1.63
49120--49149 15 2.0 15 93 0 51 40 20 10 30 1.85
49779--49814 18 2.0 18 100 0 72 55 11 5 27 1.57
50783--50817 16 2.2 16 100 0 70 22 11 5 60 1.52
50971--50996 12 2.2 12 100 0 52 46 15 7 30 1.74
51245--51285 20 2.0 20 100 0 82 41 9 4 43 1.59
51272--51320 25 2.0 25 92 4 82 46 6 4 42 1.47
51330--51373 11 4.2 10 80 8 52 43 0 0 56 0.99
51366--51404 15 2.4 16 83 16 53 56 0 0 43 0.99
51378--51407 15 2.0 15 100 0 60 60 0 0 40 0.97
51347--51401 28 2.0 27 85 3 74 52 0 0 47 1.00
51475--51536 7 9.4 7 74 13 60 41 3 1 53 1.27
51468--51521 23 2.2 26 87 9 78 42 5 0 51 1.25
51469--51561 13 7.5 12 73 19 75 41 4 1 52 1.28
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
51559--51595 19 1.9 19 94 0 65 45 0 8 45 1.32
51609--51665 11 5.6 11 73 26 63 36 0 7 56 1.27
51608--51659 8 6.6 8 75 20 56 34 0 9 55 1.32
51631--51664 17 2.0 17 100 0 68 35 0 5 58 1.22
51620--51673 28 2.0 27 85 10 74 38 0 5 55 1.23
56154--56188 16 2.1 17 89 5 54 22 0 0 77 0.78
56207--56263 26 2.2 26 96 0 105 43 5 0 50 1.24
56297--56344 23 2.0 24 96 4 89 27 14 0 58 1.37
56301--56352 23 2.2 24 86 3 70 30 11 1 55 1.46
56625--56651 14 1.9 14 100 0 54 37 11 14 37 1.82
61621--61648 14 2.0 14 100 0 56 35 0 14 50 1.43
66127--66240 2 58.0 2 71 22 82 49 3 5 42 1.42
66125--66237 27 3.9 28 73 14 95 48 4 5 41 1.46
66143--66217 23 3.3 23 78 14 102 46 5 6 41 1.53
66145--66215 21 3.3 21 71 21 74 46 5 7 40 1.54
66127--66240 17 7.6 16 70 20 70 49 3 5 42 1.42
66127--66238 44 2.6 44 98 1 217 49 3 5 41 1.43
66127--66234 29 3.7 29 77 11 107 49 3 5 41 1.44
67725--67751 13 2.1 13 100 0 54 40 0 14 44 1.46
73780--73824 16 2.8 16 96 0 81 48 2 0 48 1.13
73900--73940 17 2.3 18 87 4 57 56 9 0 34 1.32
73966--73992 13 2.1 13 100 0 54 48 0 14 37 1.45
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
75748--75781 17 2.0 17 100 0 68 41 11 17 29 1.85
79332--79360 14 2.1 14 100 0 58 20 6 13 58 1.58
85131--85163 16 2.1 16 100 0 66 30 6 30 33 1.82
86784--86832 24 2.0 24 88 0 71 26 32 12 28 1.92
88002--88027 13 2.0 13 100 0 52 53 0 7 38 1.30
90854--90886 15 2.3 14 94 5 57 21 51 0 27 1.48
93870--93899 15 2.0 15 93 0 51 43 13 30 13 1.82
94124--94171 24 2.0 24 95 0 87 31 8 27 33 1.86
96516--96572 21 2.7 21 97 0 105 10 24 14 50 1.73
98962--99013 18 3.1 18 86 8 74 30 5 25 38 1.79
100281--100320 15 2.7 15 100 0 80 37 10 35 17 1.83
116682--116729 11 4.4 10 78 17 51 33 2 0 64 1.05
116687--116733 23 2.0 23 91 0 76 36 2 0 61 1.08
116836--116884 17 2.9 17 87 3 64 36 10 2 51 1.48
116856--116887 16 2.0 16 100 0 64 43 6 6 43 1.54
120258--120291 16 2.1 16 100 0 68 20 11 17 50 1.77
121068--121099 16 2.0 16 100 0 64 31 6 0 62 1.20
125717--125754 20 1.9 20 100 0 76 13 7 0 78 0.94
125745--125773 14 2.1 14 100 0 58 34 6 0 58 1.25
136451--136486 18 2.0 18 100 0 72 22 22 22 33 1.97
154278--154317 15 2.7 15 100 0 80 17 35 10 37 1.83
155585--155636 18 3.1 18 86 8 74 38 25 5 30 1.79
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
158026--158082 21 2.7 21 97 0 105 50 14 24 10 1.73
160427--160474 24 2.0 24 95 0 87 33 27 8 31 1.86
160699--160728 15 2.0 15 93 0 51 13 30 13 43 1.82
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Tables: 1
The End!