NC_047178.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_047178.1 Lepidium sativum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154997
Tables: 1
This is table 1 of 1 ( 27 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4551--4581 14 2.2 14 94 0 53 41 0 0 58 0.98
32238--32267 15 2.0 15 100 0 60 53 6 6 33 1.53
35859--35887 10 3.0 10 95 5 51 62 0 10 27 1.28
35884--35914 13 2.5 13 94 5 55 51 0 0 48 1.00
47785--47979 83 2.3 83 84 1 266 29 17 26 25 1.98
54164--54199 18 2.0 18 100 0 72 38 11 22 27 1.88
58856--58908 25 2.1 25 82 6 63 28 5 11 54 1.58
62864--62912 17 2.7 18 79 17 57 36 8 4 51 1.51
65186--65214 15 2.0 15 93 6 51 20 0 6 72 1.07
71875--71908 15 2.3 15 100 0 68 47 5 0 47 1.26
84718--84756 20 2.0 20 89 0 60 33 10 12 43 1.77
88902--88997 24 4.3 22 90 6 124 12 20 11 55 1.68
88924--89015 21 4.2 21 87 4 112 13 21 8 56 1.63
88902--89015 42 2.6 43 83 8 140 13 21 9 55 1.66
91353--91410 18 3.4 17 88 6 75 32 6 22 37 1.81
99591--99625 18 1.9 18 94 0 61 25 8 8 57 1.57
107796--107846 26 2.0 26 96 0 93 49 25 7 17 1.74
115863--115903 14 2.6 16 85 11 50 75 7 9 7 1.18
121756--121781 12 2.2 12 100 0 52 23 7 0 69 1.14
131159--131209 26 2.0 26 96 0 93 17 7 25 49 1.74
139380--139414 18 1.9 18 94 0 61 57 8 8 25 1.57
147595--147640 18 2.6 18 92 0 74 34 23 8 32 1.86
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
147595--147652 18 3.4 17 88 6 66 37 22 6 32 1.81
149991--150103 24 5.1 21 88 4 102 54 9 22 13 1.67
149991--150083 21 4.3 21 85 8 116 55 8 22 12 1.64
150018--150103 24 3.7 24 92 4 133 53 11 20 13 1.71
154249--154287 20 2.0 20 89 0 60 43 12 10 33 1.77
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!