NC_047246.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_047246.1 Trachyspermum ammi chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154378
Tables: 1
This is table 1 of 1 ( 22 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6123--6149 14 1.9 14 100 0 54 29 25 0 44 1.54
20637--20733 49 2.0 49 89 0 149 29 17 20 31 1.96
27227--27253 14 1.9 14 100 0 54 37 11 7 44 1.68
28453--28479 13 2.1 13 100 0 54 37 7 29 25 1.83
29729--29756 9 3.1 9 100 0 56 21 10 0 67 1.20
31431--31483 26 2.0 26 100 0 106 47 7 7 37 1.60
42721--42758 18 2.1 18 100 0 76 39 15 15 28 1.89
47025--47079 15 3.7 15 97 0 101 34 7 0 58 1.26
47077--47111 16 2.2 16 94 0 61 65 0 14 20 1.26
47577--47602 13 2.0 13 100 0 52 38 23 7 30 1.83
62195--62221 14 1.9 14 100 0 54 40 14 7 37 1.74
67992--68032 21 2.0 21 95 0 73 29 26 9 34 1.88
74238--74274 19 1.9 19 100 0 74 54 16 8 21 1.68
76332--76379 23 2.1 23 100 0 96 45 4 12 37 1.61
88399--88466 21 3.2 21 77 8 75 11 22 8 57 1.61
90828--90911 18 4.7 18 96 0 150 28 5 30 34 1.81
106961--107026 32 2.1 32 97 0 123 40 24 9 25 1.84
118560--118600 20 2.0 20 100 0 82 58 9 4 26 1.50
131402--131467 32 2.1 32 97 0 123 25 9 24 40 1.84
147517--147600 18 4.7 18 96 0 150 34 30 5 28 1.81
149980--150033 21 2.6 21 82 11 74 59 11 20 9 1.59
149963--150032 21 3.4 19 72 16 59 57 8 22 11 1.61
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Tables: 1
The End!