NC_047248.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_047248.1 Hedychium spicatum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 163531
Tables: 1
This is table 1 of 1 ( 89 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1449--1488 20 2.0 20 100 0 80 60 15 5 20 1.53
1499--1529 15 2.1 15 100 0 62 51 6 6 35 1.53
4974--5024 20 2.6 20 96 3 95 3 11 7 76 1.13
7586--7619 17 2.0 17 100 0 68 64 5 5 23 1.38
8144--8179 16 2.2 16 100 0 72 38 0 5 55 1.23
8412--8436 13 1.9 13 100 0 50 72 12 0 16 1.13
8948--9047 6 16.7 6 74 20 61 47 6 0 47 1.27
8978--9022 8 6.2 8 85 15 55 48 8 0 42 1.34
8960--9023 27 2.3 27 91 5 101 45 9 0 45 1.36
8958--9022 33 1.9 35 90 6 107 46 9 0 44 1.35
8958--9036 27 2.7 31 81 16 98 46 7 0 45 1.31
9020--9076 11 5.2 11 76 21 57 45 0 0 54 0.99
9027--9076 15 2.9 18 77 22 54 44 0 0 56 0.99
13362--13387 13 2.0 13 100 0 52 46 15 23 15 1.83
14801--14846 10 4.7 10 74 15 51 65 0 0 34 0.93
14795--14846 16 3.4 16 82 15 74 65 0 0 34 0.93
14807--14834 13 2.2 13 100 0 56 64 0 0 35 0.94
14988--15021 4 8.5 4 87 12 52 76 0 0 23 0.79
14986--15055 11 6.3 11 76 15 63 70 2 0 27 1.02
15038--15062 11 2.3 11 100 0 50 56 0 0 44 0.99
17376--17402 14 1.9 14 100 0 54 62 7 7 22 1.46
17437--17498 31 2.0 31 100 0 124 35 12 19 32 1.90
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
26017--26064 21 2.3 21 92 0 78 18 18 18 43 1.88
28387--28422 18 2.0 18 100 0 72 38 5 0 55 1.23
29657--29694 19 2.0 19 100 0 76 57 0 15 26 1.38
30200--30240 20 2.0 20 95 0 73 63 4 7 24 1.40
30255--30293 19 2.1 19 100 0 78 38 10 10 41 1.73
31285--31325 16 2.6 16 92 3 66 34 19 7 39 1.80
32686--32717 15 2.1 15 100 0 64 21 6 12 59 1.55
32786--32850 29 2.2 29 91 0 103 46 15 18 20 1.84
33500--33553 18 3.0 18 100 0 108 22 0 5 72 1.05
33502--33554 8 5.5 11 68 32 50 24 0 5 69 1.09
34392--34491 48 2.1 48 98 1 193 44 6 6 44 1.53
34599--34640 21 2.0 21 85 0 57 35 14 9 40 1.78
39147--39195 14 3.7 14 75 25 61 40 22 6 30 1.78
48960--48990 15 2.1 15 93 0 53 16 6 9 67 1.39
49208--49238 13 2.5 13 94 5 55 48 29 0 22 1.51
49398--49435 12 3.3 12 78 14 53 47 15 5 31 1.68
49398--49441 22 2.0 22 100 0 88 45 18 4 31 1.69
53900--53958 20 2.8 21 84 7 84 38 18 0 42 1.51
54038--54073 15 2.3 16 90 9 65 58 11 0 30 1.33
60660--60698 19 2.1 19 100 0 78 58 5 10 25 1.51
63051--63157 12 9.2 12 66 28 54 40 4 0 55 1.21
63053--63104 21 2.4 21 96 3 95 42 3 0 53 1.19
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
63055--63126 20 3.6 20 82 15 87 40 5 0 54 1.24
63208--63261 20 2.5 23 85 11 78 44 5 0 50 1.25
63309--63340 16 2.0 16 100 0 64 56 0 12 31 1.37
67429--67470 21 2.0 21 81 9 50 21 9 16 52 1.72
68959--69057 15 7.1 15 72 21 90 48 0 9 42 1.35
68944--69094 12 12.7 12 66 21 68 47 1 9 41 1.44
68959--69094 26 5.2 27 71 18 74 47 0 9 42 1.41
68935--69127 41 4.8 38 75 17 135 48 1 9 40 1.45
68948--69111 19 8.3 19 71 16 111 48 1 9 41 1.43
69061--69125 24 2.7 24 80 0 76 50 0 10 38 1.37
68988--69111 56 2.2 56 81 11 139 46 0 10 41 1.44
69079--69118 19 2.1 19 100 0 80 52 0 10 37 1.35
71960--72024 21 3.1 21 88 0 103 35 24 7 32 1.84
73203--73242 20 2.0 20 100 0 80 25 20 0 55 1.44
75271--75304 16 2.1 16 100 0 68 41 5 11 41 1.66
75276--75316 17 2.5 16 88 4 55 34 9 9 46 1.70
76164--76192 14 2.1 14 100 0 58 34 6 6 51 1.55
76190--76218 14 2.1 14 100 0 58 37 0 20 41 1.53
83588--83636 24 2.0 24 92 0 80 28 32 12 26 1.92
84813--84863 22 2.2 23 86 6 68 9 3 7 78 1.07
84921--84968 24 2.0 24 100 0 96 25 12 12 50 1.75
90917--91012 50 1.9 50 97 0 183 42 17 9 30 1.81
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
93565--93650 24 3.7 24 93 4 142 13 25 11 48 1.77
94894--94936 21 2.0 21 90 0 68 32 9 25 32 1.88
96088--96135 24 2.0 24 87 0 69 31 10 25 33 1.89
104640--104687 23 2.1 23 96 0 87 41 8 4 45 1.53
115834--115875 21 2.0 21 90 0 66 52 7 26 14 1.67
120319--120351 16 2.1 16 100 0 66 45 0 18 36 1.49
121411--121447 19 1.9 19 100 0 74 59 0 8 32 1.27
123200--123239 18 2.2 18 95 0 71 47 2 0 50 1.14
125648--125703 7 7.4 8 77 18 57 48 3 1 46 1.30
125648--125702 16 3.5 16 85 2 76 47 3 1 47 1.30
125648--125703 2 29.5 2 76 16 57 48 3 1 46 1.30
125819--125894 5 15.4 5 79 16 79 36 0 0 63 0.95
125809--125907 14 7.2 14 76 18 75 36 1 0 62 1.02
125819--125889 9 8.2 9 76 14 69 38 0 0 61 0.96
125794--125903 35 3.3 34 72 21 99 32 1 0 65 1.03
125823--125903 26 3.0 26 82 8 74 37 1 0 61 1.04
127140--127187 25 1.9 25 83 8 62 45 4 4 45 1.41
135873--135914 21 2.0 21 90 0 66 14 26 7 52 1.67
147061--147108 23 2.1 23 96 0 87 45 4 8 41 1.53
155613--155681 24 2.9 24 76 8 70 34 26 7 31 1.84
156812--156854 21 2.0 21 90 0 68 32 25 9 32 1.88
158098--158183 24 3.7 24 93 4 142 48 11 25 13 1.77
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
160736--160831 50 1.9 50 97 0 183 30 9 17 42 1.81
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Tables: 1
The End!