NC_047249.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_047249.1 Syzygium aromaticum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159370
Tables: 1
This is table 1 of 1 ( 48 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4829--4863 15 2.3 15 90 0 52 68 2 11 17 1.31
7873--7897 12 2.1 12 100 0 50 48 0 28 24 1.52
8804--8846 18 2.4 18 96 0 77 65 0 0 34 0.93
8799--8862 23 3.0 23 80 19 93 64 0 0 35 0.94
13917--13941 13 1.9 13 100 0 50 32 12 0 56 1.36
14262--14307 25 1.9 23 86 8 65 10 10 0 78 0.97
14302--14348 21 2.2 22 88 3 69 31 6 0 61 1.21
14303--14368 30 2.2 29 82 12 80 33 4 3 59 1.33
15803--15832 15 2.0 15 93 0 51 23 3 0 73 0.98
15840--15881 21 2.0 21 100 0 84 47 0 9 42 1.36
20657--20693 18 2.1 18 100 0 74 43 10 21 24 1.84
24281--24326 23 2.0 23 100 0 92 30 26 8 34 1.86
34266--34307 21 2.0 21 100 0 84 42 14 4 38 1.66
34751--34784 17 2.0 17 100 0 68 35 11 11 41 1.78
34841--34876 18 2.0 18 100 0 72 55 0 16 27 1.42
35560--35602 18 2.4 18 85 14 54 74 0 11 13 1.07
35792--35818 13 2.1 13 100 0 54 33 7 14 44 1.73
39645--39729 15 5.2 15 74 18 55 64 2 7 25 1.31
39765--39803 18 2.2 18 100 0 78 46 5 0 48 1.24
40104--40131 14 2.0 14 100 0 56 50 0 0 50 1.00
45679--45745 13 5.0 13 79 13 73 37 0 1 61 1.05
45676--45738 22 3.0 22 90 9 105 36 0 3 60 1.13
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
46862--46887 13 2.0 13 100 0 52 23 7 7 61 1.49
46861--46890 13 2.4 12 89 10 51 20 6 6 66 1.38
48146--48186 14 2.9 14 85 7 55 68 14 2 14 1.32
50393--50429 17 2.2 17 100 0 74 54 0 5 40 1.24
51188--51231 21 2.1 21 95 0 79 56 0 15 27 1.40
54586--54636 22 2.4 22 86 3 68 43 7 5 43 1.57
58243--58288 23 2.0 23 100 0 92 52 4 8 34 1.52
69574--69612 18 2.2 18 100 0 78 38 0 0 61 0.96
75714--75739 13 2.0 13 100 0 52 38 7 0 53 1.30
85932--85970 20 2.0 20 95 5 71 28 5 5 61 1.39
86895--86921 13 2.1 13 100 0 54 18 37 0 44 1.50
87646--87694 22 2.2 22 100 0 98 40 16 10 32 1.82
93170--93235 21 3.2 21 82 2 80 12 22 7 57 1.60
95598--95642 18 2.5 18 100 0 90 33 6 31 28 1.83
104693--104725 16 2.1 16 100 0 66 18 6 24 51 1.68
113257--113288 16 2.0 16 93 0 55 37 15 9 37 1.80
113654--113703 6 8.8 6 80 8 52 70 4 18 8 1.28
113654--113703 17 2.9 17 85 5 57 70 4 18 8 1.28
113656--113705 23 2.2 23 100 0 100 72 4 16 8 1.24
134033--134082 6 8.8 6 80 8 52 8 18 4 70 1.28
134031--134080 23 2.2 23 100 0 100 8 16 4 72 1.24
134448--134479 16 2.0 16 93 0 55 37 9 15 37 1.80
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
143011--143043 16 2.1 16 100 0 66 51 24 6 18 1.68
152094--152138 18 2.5 18 100 0 90 28 31 6 33 1.83
152094--152137 9 4.9 9 80 0 52 29 31 4 34 1.78
154500--154589 21 4.1 21 81 4 81 55 10 22 12 1.66
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Tables: 1
The End!