NC_047281.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_047281.1 Gleditsia japonica chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 162391 Tables: 1 2 This is table 1 of 2 ( 212 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 177--216 22 1.9 20 85 10 53 62 7 2 27 1.35 205--250 19 2.4 18 82 13 56 65 0 6 28 1.17 607--651 21 2.1 21 95 0 81 62 0 15 22 1.33 4824--4852 13 2.2 13 100 0 58 72 0 13 13 1.13 5402--5442 21 1.9 22 95 5 75 56 9 0 34 1.32 5541--5567 12 2.2 12 100 0 54 25 14 0 59 1.36 7187--7316 13 9.8 14 70 20 84 40 3 0 56 1.18 7187--7308 23 5.4 23 70 20 80 39 4 0 56 1.18 7288--7533 11 21.9 11 70 20 147 61 0 0 38 0.96 7327--7533 17 12.1 17 77 18 78 61 0 0 38 0.96 7280--7534 74 3.4 75 70 18 197 60 0 0 39 0.97 7269--7533 24 10.5 26 73 19 142 60 0 0 39 0.97 7375--7564 17 11.2 17 77 16 123 59 0 0 40 0.97 7266--7540 13 21.8 13 70 22 137 59 0 0 40 0.97 7266--7545 76 3.7 77 75 17 262 59 0 0 40 0.97 7535--7592 20 3.0 20 87 5 75 50 5 0 44 1.24 7965--8007 21 2.0 21 100 0 86 48 18 4 27 1.68 8219--8278 26 2.3 26 80 5 68 26 5 3 65 1.29 8277--8317 19 2.2 19 95 0 73 46 0 9 43 1.36 8374--8417 19 2.3 19 84 7 54 52 2 0 45 1.13 9676--9710 10 3.4 11 84 15 56 68 0 0 31 0.90 9673--9727 20 2.8 20 91 2 85 65 0 0 34 0.93 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 9709--9744 12 2.9 12 95 4 63 58 0 0 41 0.98 9668--9751 34 2.5 34 75 12 93 63 0 0 36 0.95 11026--11063 20 1.9 20 94 0 67 60 0 7 31 1.25 11072--11113 18 2.3 19 83 8 59 30 0 9 59 1.29 11154--11193 20 2.0 20 100 0 80 50 0 5 45 1.23 11157--11213 16 3.2 17 82 14 62 52 1 3 42 1.28 11745--11841 8 12.6 8 72 11 69 49 0 0 50 1.00 11769--11883 5 21.2 5 70 18 54 54 0 0 45 0.99 11799--11885 3 29.3 3 73 19 67 56 0 0 43 0.99 11733--11871 39 3.5 39 89 10 189 51 0 0 48 1.00 11883--11922 17 2.4 16 84 8 53 42 0 2 55 1.13 14929--14992 19 2.9 23 77 22 82 35 0 0 64 0.94 14985--15021 18 2.1 18 100 0 74 56 0 0 43 0.99 15068--15109 18 2.3 18 95 4 75 40 0 4 54 1.21 15850--15905 19 2.8 20 91 5 96 44 7 5 42 1.54 30393--30428 18 2.0 18 100 0 72 27 5 11 55 1.57 31096--31218 24 5.4 24 70 20 84 34 0 0 65 0.93 31069--31191 5 24.6 5 69 17 60 28 2 0 69 1.02 31067--31209 21 6.8 20 73 14 92 30 2 0 67 1.03 31131--31253 11 11.4 11 77 11 112 39 0 0 60 0.97 31160--31253 20 4.5 22 80 7 106 40 0 0 59 0.97 31159--31329 11 17.3 11 71 22 96 45 0 0 54 0.99 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 31190--31336 18 7.7 19 80 17 148 48 0 0 51 1.00 31159--31336 39 4.5 39 75 20 156 45 0 0 54 0.99 31244--31347 39 2.9 38 86 10 139 50 0 0 48 1.07 31390--31443 10 5.4 10 75 16 58 44 0 0 55 0.99 31391--31449 20 3.0 20 100 0 118 44 0 0 55 0.99 31439--31463 13 1.9 13 100 0 50 24 0 0 76 0.80 34719--34746 13 2.2 13 100 0 56 21 7 32 39 1.80 35140--35170 16 1.9 16 93 0 53 48 6 12 32 1.67 35939--35999 20 3.0 20 100 0 122 50 4 4 39 1.45 40267--40433 3 58.7 3 75 14 140 61 0 0 38 0.96 40384--40444 13 5.5 13 65 34 52 65 0 0 34 0.93 40379--40444 21 3.1 21 100 0 132 66 0 0 33 0.92 40448--40486 17 2.2 18 86 9 62 64 2 0 33 1.08 40454--40486 17 1.9 17 100 0 66 66 3 0 30 1.06 40533--40618 10 8.8 10 77 18 92 51 1 0 47 1.08 40552--40650 19 5.3 18 82 11 110 51 0 0 48 1.00 40549--40669 39 3.3 38 80 15 146 52 0 0 47 1.00 40544--40656 57 1.9 59 91 3 185 52 0 0 47 1.00 40637--40683 14 3.2 14 85 11 67 61 0 0 38 0.96 40562--40679 16 7.2 16 77 17 75 54 0 0 45 0.99 40618--40683 30 2.1 32 86 8 91 57 0 0 42 0.98 40706--40740 15 2.3 15 90 9 54 54 0 0 45 0.99 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 40773--40815 22 2.0 22 95 0 77 46 4 6 41 1.51 40803--40844 20 2.1 20 90 0 66 45 7 16 30 1.74 40853--40897 14 3.1 14 87 6 54 53 0 15 31 1.43 40838--40880 21 2.0 21 100 0 86 53 0 18 27 1.45 47106--47150 18 2.6 18 92 3 74 51 20 0 28 1.48 47114--47151 14 2.6 14 91 4 58 52 18 0 28 1.45 47108--47161 18 3.2 17 84 5 56 59 14 0 25 1.36 47668--47700 17 1.9 17 93 0 57 36 12 3 48 1.56 50923--50952 15 2.0 15 100 0 60 26 20 6 46 1.75 51177--51256 13 6.5 13 78 11 71 42 0 0 57 0.98 51144--51299 31 5.4 30 78 17 147 38 0 0 61 0.96 51253--51322 9 7.4 9 69 15 52 34 0 0 65 0.93 51327--51371 11 4.5 11 76 23 55 55 0 0 44 0.99 51352--51391 15 2.5 15 92 8 62 42 0 0 57 0.98 51157--51573 18 23.3 18 70 21 101 46 0 0 53 1.00 51404--51553 27 5.4 27 80 12 144 51 0 0 48 1.00 51437--51557 45 2.7 46 80 15 137 52 0 0 47 1.00 51401--51647 105 2.3 108 80 17 264 52 0 0 47 1.00 51412--51664 27 9.8 26 74 18 137 52 0 0 47 1.00 51519--51671 42 3.6 43 66 29 80 54 0 0 44 1.04 51574--51711 48 2.8 49 80 10 131 57 0 0 41 1.03 51626--51708 33 2.5 33 77 13 89 60 0 1 38 1.05 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 51928--51974 10 5.2 9 76 19 53 23 2 10 63 1.37 51928--51981 26 2.1 26 96 0 99 24 1 11 62 1.37 54189--54231 21 2.0 21 100 0 86 23 18 9 48 1.76 54805--54832 14 2.0 14 100 0 56 28 0 14 57 1.38 54805--54845 11 3.3 12 86 13 57 29 0 14 56 1.39 56342--56403 21 2.7 23 85 12 92 27 8 0 64 1.21 56429--56468 19 2.1 19 100 0 80 52 5 5 37 1.45 56462--56517 17 3.0 17 77 22 67 41 12 0 46 1.42 56470--56513 22 2.0 22 100 0 88 40 13 0 45 1.44 62015--62070 28 2.0 28 89 0 85 53 1 0 44 1.11 62021--62204 18 10.1 18 71 23 111 55 0 0 44 0.99 62021--62146 54 2.4 51 79 18 141 53 0 0 46 1.00 62073--62149 24 3.2 24 80 8 93 50 0 0 49 1.00 62033--62204 64 2.7 64 73 21 175 55 0 0 44 0.99 62154--62244 7 14.6 7 64 23 51 59 0 0 40 0.97 62020--62237 12 16.1 14 67 25 66 56 0 0 43 0.99 62061--62245 18 9.9 19 74 21 76 56 0 0 43 0.99 62249--62281 17 1.9 17 88 11 50 27 0 0 72 0.85 62298--62329 16 2.0 16 100 0 64 37 6 6 50 1.53 62691--62737 9 4.9 10 77 17 55 44 0 0 55 0.99 62690--62761 18 3.9 18 84 10 92 50 0 0 50 1.00 64525--64587 18 3.6 17 75 10 65 22 4 0 73 1.02 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 64561--65150 11 54.5 11 67 22 165 38 1 0 59 1.09 64559--65137 19 31.9 19 75 18 347 38 1 0 59 1.08 64834--65136 14 25.2 12 67 22 99 38 0 0 60 1.02 65162--65191 14 2.1 14 100 0 60 20 0 0 80 0.72 64990--65193 17 11.5 17 72 16 60 33 0 1 64 1.02 65210--65262 27 2.0 27 92 0 88 45 5 9 39 1.60 65289--65355 35 1.9 35 90 0 107 62 8 7 20 1.49 68772--68875 5 21.4 5 69 20 69 59 0 0 39 1.04 68777--68852 7 10.0 7 76 16 71 60 0 0 39 0.97 68772--68864 15 5.9 16 80 16 99 60 0 0 39 0.97 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2