NC_047282.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_047282.1 Gleditsia sinensis chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 163175 Tables: 1 2 This is table 1 of 2 ( 226 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 348--397 25 2.0 25 96 0 91 58 0 16 26 1.38 350--413 25 2.7 24 85 9 78 57 0 15 26 1.38 4461--4495 12 2.8 13 83 16 56 71 8 0 20 1.11 5144--5191 16 2.9 17 90 6 80 58 8 0 33 1.28 5293--5319 12 2.2 12 100 0 54 25 14 0 59 1.36 6110--6146 18 2.1 18 100 0 74 27 16 5 51 1.66 6936--7005 20 3.5 20 88 3 97 47 0 0 52 1.00 6982--7123 4 38.2 4 74 17 69 58 0 0 41 0.98 6961--7034 11 6.5 11 73 18 62 48 0 0 51 1.00 6945--7181 18 13.6 18 74 17 166 58 0 0 41 0.98 7040--7138 3 34.0 3 70 20 68 64 0 0 35 0.94 6971--7181 44 4.8 44 80 12 188 58 0 0 41 0.98 6965--7181 15 14.9 14 72 17 133 58 0 0 41 0.98 7024--7179 48 3.1 49 84 14 180 62 0 0 37 0.95 7024--7179 39 4.1 41 76 20 121 62 0 0 37 0.95 7186--7222 14 2.6 14 91 8 58 24 0 2 72 0.97 7203--7305 20 5.0 20 80 10 91 35 0 0 64 0.94 7238--7370 2 72.5 2 73 16 83 40 0 0 59 0.97 7237--7691 6 70.6 7 67 24 122 36 1 0 62 1.02 7234--7702 18 26.4 18 68 23 146 36 1 0 62 1.03 7218--7422 20 9.8 22 72 19 127 36 0 0 63 0.95 7211--7453 56 4.2 59 73 13 186 35 0 0 64 0.94 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 7236--7453 52 4.1 52 79 11 196 36 0 0 63 0.94 7271--7674 25 16.3 25 71 17 142 35 1 0 62 1.03 7450--7548 51 2.0 50 90 6 155 34 5 0 60 1.18 7197--7702 58 8.7 59 70 19 230 35 0 0 63 1.02 7693--7727 17 2.0 18 94 5 63 51 0 0 48 1.00 8325--8403 26 3.0 27 84 1 81 30 2 3 63 1.25 8357--8409 26 2.0 26 100 0 106 37 0 3 58 1.16 8391--8430 11 3.6 11 80 12 55 45 0 7 47 1.31 8507--8572 19 3.3 20 80 12 73 51 3 0 45 1.16 8525--8563 12 3.4 12 79 13 55 53 2 0 43 1.14 8521--8565 22 2.0 22 100 0 90 51 4 0 44 1.21 8525--8571 22 2.1 22 92 0 76 55 2 0 42 1.12 9811--9846 18 2.0 18 100 0 72 38 5 0 55 1.23 9835--9865 15 2.1 14 94 5 53 61 0 0 38 0.96 9833--9879 24 2.0 23 83 4 58 63 0 2 34 1.06 11172--11213 18 2.3 19 83 8 59 30 0 9 59 1.29 11306--11357 11 4.2 11 74 25 50 26 0 7 65 1.20 11307--11363 28 2.0 28 100 0 114 33 0 7 59 1.24 11791--11849 25 2.3 25 85 8 75 47 0 0 52 1.00 11795--11833 15 2.6 15 95 0 69 51 0 0 48 1.00 11860--11911 17 3.2 17 92 7 83 46 0 5 48 1.26 11915--11953 21 1.9 21 89 5 62 56 0 0 43 0.99 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 11946--11991 10 5.0 10 77 17 55 47 0 0 52 1.00 11946--11991 18 2.6 18 96 0 83 47 0 0 52 1.00 11937--11990 18 2.7 20 77 16 58 48 0 0 51 1.00 11999--12043 20 2.2 20 96 0 81 37 0 4 57 1.19 12002--12055 20 3.0 18 84 12 67 42 0 3 53 1.18 11946--12044 18 5.2 20 76 18 79 45 0 2 52 1.12 15081--15128 11 4.2 12 84 7 57 50 0 0 50 1.00 15083--15129 12 4.1 11 83 5 58 51 0 0 48 1.00 15106--15142 18 2.1 18 100 0 74 56 0 0 43 0.99 15086--15141 23 2.4 21 77 16 58 51 0 0 48 1.00 15962--16007 23 2.0 23 91 0 74 52 6 6 34 1.53 25278--25308 15 2.0 16 93 6 55 58 6 0 35 1.24 30463--30516 18 3.0 18 100 0 108 27 5 11 55 1.57 31180--31342 18 8.9 18 75 16 79 44 0 0 55 0.99 31178--31301 36 3.3 36 87 10 155 44 0 0 55 0.99 31189--31364 54 3.1 55 79 14 173 44 0 0 55 0.99 31196--31370 36 4.6 37 77 17 130 45 0 0 54 0.99 33709--33792 28 3.0 28 100 0 168 46 17 10 25 1.80 35192--35219 13 2.2 13 100 0 56 21 7 32 39 1.80 35628--35658 16 1.9 16 93 0 53 48 6 12 32 1.67 36404--36440 11 3.4 11 100 0 74 37 0 8 54 1.30 36772--36805 15 2.4 15 90 9 54 70 0 11 17 1.16 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 40739--40787 14 3.2 14 83 16 62 44 0 0 55 0.99 40779--40827 19 2.5 19 87 9 64 59 0 0 40 0.98 40778--40838 15 3.9 15 82 10 70 59 0 0 40 0.98 40792--40877 31 3.0 30 75 21 87 63 0 1 34 1.02 40776--40875 15 6.9 15 76 16 63 62 0 1 37 1.02 40760--40876 60 2.0 55 80 16 123 60 0 0 38 1.03 40792--40871 28 2.7 28 81 14 74 63 0 1 35 1.02 40855--40913 32 1.9 30 86 6 82 79 0 1 18 0.81 40795--40913 13 8.9 13 76 14 82 69 0 1 28 0.98 40910--40985 20 3.9 20 80 13 79 51 6 0 42 1.28 40892--40941 14 3.9 13 82 17 52 66 4 0 30 1.10 40921--40985 20 3.3 20 89 4 89 49 6 0 44 1.27 40989--41033 22 2.0 22 95 0 81 44 0 0 55 0.99 41041--41079 16 2.4 16 100 0 78 35 0 5 58 1.20 41031--41133 21 5.2 21 90 9 148 44 0 4 50 1.23 41011--41133 42 3.3 37 83 13 148 43 0 4 52 1.20 41121--41196 24 3.1 23 78 17 75 56 0 1 42 1.07 41198--41248 21 2.5 21 93 3 86 47 0 0 52 1.00 41277--41314 20 1.9 20 88 0 58 47 5 18 28 1.70 41307--41346 14 2.8 14 88 3 53 55 0 15 30 1.41 47558--47592 15 2.2 16 90 5 54 62 2 0 34 1.10 48097--48129 17 1.9 17 93 0 57 36 12 3 48 1.56 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 51594--51638 16 2.9 16 93 3 74 42 0 0 57 0.98 51602--51654 9 6.0 9 78 12 65 41 0 0 58 0.98 51640--51705 7 9.7 7 76 11 66 50 0 3 46 1.16 51621--51912 4 82.5 4 66 23 88 45 0 2 52 1.15 51640--51692 14 3.9 14 92 2 81 50 0 3 45 1.19 51640--51922 25 11.4 27 72 16 98 46 0 2 50 1.17 51716--51831 26 5.3 21 81 16 105 37 0 0 61 1.02 51605--51987 19 20.9 19 73 15 158 47 0 2 49 1.17 51751--51985 6 37.7 6 69 20 94 50 0 2 47 1.15 51802--51987 38 4.9 37 80 17 188 54 0 3 41 1.16 51844--51924 27 3.1 26 73 18 78 55 0 2 41 1.13 52000--52095 23 4.0 24 72 17 83 33 5 0 61 1.18 52026--52078 19 2.8 19 91 0 88 33 5 0 60 1.20 52026--52140 17 6.3 18 77 15 71 30 5 0 64 1.15 51998--52143 25 5.8 25 69 18 99 30 5 0 63 1.17 52064--52141 23 3.2 25 79 13 76 28 3 0 67 1.07 52183--52236 26 2.1 26 100 0 108 59 0 0 40 0.98 52261--52319 18 3.0 20 87 12 86 38 1 0 59 1.08 52261--52319 22 2.9 22 85 12 81 38 1 0 59 1.08 52384--52512 63 2.0 63 100 0 258 45 7 6 40 1.58 52763--52809 10 5.2 9 76 19 53 23 2 10 63 1.37 52763--52816 26 2.1 26 96 0 99 24 1 11 62 1.37 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 55601--55631 14 2.2 14 100 0 62 25 0 12 61 1.32 55603--55644 14 3.4 12 87 12 59 28 0 14 57 1.38 57075--57136 22 2.6 24 82 10 65 33 0 1 64 1.03 57092--57131 14 2.9 14 92 3 64 40 0 0 60 0.97 57112--57164 20 2.7 20 88 5 72 54 0 0 45 0.99 57177--57368 16 12.7 16 68 23 89 42 0 0 57 0.98 57207--57396 38 4.7 40 76 20 180 43 0 0 56 0.99 57193--57398 58 3.4 58 78 15 204 44 0 0 55 0.99 57179--57402 106 2.1 106 82 10 271 44 0 0 55 0.99 57301--57374 34 2.1 35 85 14 107 37 0 0 62 0.96 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2