NC_047402.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_047402.1 Abrus precatorius voucher Yi15513-KUN plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156500
Tables: 1
This is table 1 of 1 ( 51 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4770--4814 22 2.0 22 100 0 90 26 8 0 64 1.23
4768--4832 22 3.2 20 85 12 71 29 7 1 61 1.33
4806--4856 17 2.9 17 91 5 75 33 1 3 60 1.26
5048--5073 12 2.2 12 100 0 52 73 0 11 15 1.11
7233--7269 13 2.8 13 91 4 56 48 5 10 35 1.61
10637--10681 15 2.9 15 86 3 54 46 11 2 40 1.52
13082--13122 18 2.3 18 95 4 75 51 9 9 29 1.67
14692--14735 22 2.0 22 95 0 79 40 9 6 43 1.63
14800--14835 17 2.1 17 89 0 54 38 8 8 44 1.65
24979--25021 21 2.0 22 86 4 61 41 6 6 44 1.58
30011--30057 22 2.1 22 100 0 94 27 23 8 40 1.83
32872--32912 17 2.3 18 87 4 66 56 2 0 41 1.13
32874--32921 24 2.0 25 91 4 80 54 4 2 39 1.32
32876--32928 24 2.2 25 86 3 72 56 3 3 35 1.35
33141--33167 13 2.1 13 100 0 54 40 7 7 44 1.60
33465--33509 22 2.0 22 95 0 81 71 0 0 28 0.87
47978--48022 21 2.1 22 88 12 67 35 4 4 55 1.40
48552--48594 23 2.0 22 90 9 70 55 13 0 30 1.39
49481--49520 13 3.2 13 82 7 55 57 7 0 35 1.27
49487--49549 2 33.0 2 73 9 51 52 3 1 42 1.27
49498--49558 12 5.4 12 74 18 51 49 1 3 45 1.28
53125--53159 16 2.2 16 89 0 52 74 0 5 20 1.02
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
53252--53293 21 1.9 21 85 9 57 57 2 21 19 1.52
56413--56481 31 2.2 31 97 2 129 37 5 14 42 1.70
58122--58161 16 2.5 16 100 0 80 25 5 20 50 1.68
60518--60578 23 2.8 21 78 9 59 62 4 1 31 1.26
64839--64878 20 2.0 20 100 0 80 60 10 5 25 1.49
66992--67016 11 2.3 11 100 0 50 16 0 0 84 0.63
66969--67021 21 2.4 22 81 6 54 20 3 1 73 1.08
67009--67055 24 2.0 22 84 8 58 36 6 4 53 1.46
67081--67155 31 2.4 31 78 12 82 54 2 6 36 1.41
68365--68394 11 2.6 11 94 5 51 73 0 6 20 1.05
68399--68456 25 2.3 25 80 11 73 63 0 12 24 1.28
69634--69685 18 2.8 18 91 2 77 46 9 5 38 1.61
72479--72521 21 2.0 21 100 0 86 32 4 0 62 1.15
74191--74216 13 2.0 13 100 0 52 46 23 0 30 1.53
86173--86220 21 2.3 21 96 0 87 39 8 4 47 1.53
91662--91729 21 3.2 21 82 0 82 11 22 7 58 1.57
94101--94140 9 4.4 9 87 0 62 35 7 30 27 1.84
101397--101441 21 2.3 19 85 14 56 8 6 2 82 0.93
101943--101968 13 2.0 13 100 0 52 23 7 7 61 1.49
111785--111832 25 1.9 25 95 0 87 58 12 12 16 1.63
113996--114037 20 2.0 21 86 13 61 54 21 0 23 1.44
120800--120843 13 3.3 13 80 3 52 43 6 0 50 1.29
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
120787--120843 28 2.1 27 83 3 69 42 8 0 49 1.34
128236--128281 22 2.0 23 83 4 58 56 0 15 28 1.39
131209--131256 25 1.9 25 95 0 87 16 12 12 58 1.63
141073--141098 13 2.0 13 100 0 52 61 7 7 23 1.49
141600--141644 21 2.2 20 84 11 56 82 2 6 8 0.93
148900--148947 9 5.3 9 82 0 51 33 27 6 33 1.82
151313--151381 21 3.3 21 83 2 86 57 7 23 11 1.58
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!