NC_047412.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_047412.1 Trifolium pratense plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 146573
Tables: 1
This is table 1 of 1 ( 75 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
133--171 19 2.1 19 100 0 78 20 10 5 64 1.44
2175--2214 21 1.9 21 94 0 71 42 12 10 35 1.76
4139--4173 15 2.3 15 95 0 61 11 2 0 85 0.69
4164--4205 21 2.0 21 90 0 66 16 11 2 69 1.29
4413--4445 9 3.7 9 100 0 66 24 9 12 54 1.66
4428--4556 30 4.3 30 87 0 186 27 13 22 37 1.91
4713--4741 13 2.2 13 100 0 58 62 0 0 37 0.96
11057--11105 24 2.0 24 88 0 71 51 2 8 38 1.43
13130--13169 19 2.1 19 100 0 80 32 20 5 42 1.73
21123--21157 18 1.9 18 100 0 70 48 5 11 34 1.63
21864--21910 20 2.3 20 92 0 76 46 4 2 46 1.34
27810--27841 16 2.0 16 100 0 64 37 0 18 43 1.51
28542--28580 2 20.5 2 89 10 64 48 0 0 51 1.00
28542--28579 13 2.9 13 100 0 76 47 0 0 52 1.00
28738--28765 10 2.8 10 100 0 56 71 0 0 28 0.86
32522--32546 13 1.9 13 100 0 50 56 0 12 32 1.36
42485--42511 12 2.2 12 100 0 54 37 7 7 48 1.59
42682--42759 21 3.6 21 76 10 93 35 12 16 34 1.87
42669--42739 21 3.1 23 72 11 83 36 11 16 35 1.85
42672--42762 45 2.0 45 100 0 182 32 13 17 36 1.88
60709--60738 15 2.1 14 93 6 51 83 6 0 10 0.81
66616--66693 21 3.6 21 76 10 93 35 12 16 34 1.87
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
66603--66673 21 3.1 23 72 11 83 36 11 16 35 1.85
66606--66696 45 2.0 45 100 0 182 32 13 17 36 1.88
69747--69847 29 3.2 29 66 21 76 63 7 8 19 1.48
69768--69871 33 3.2 32 70 16 104 60 6 9 23 1.51
69759--69872 38 3.2 38 68 25 122 59 6 9 24 1.51
69740--69872 67 2.0 66 98 1 257 60 7 9 22 1.51
72169--72208 20 2.0 20 100 0 80 45 5 20 30 1.72
75097--75188 21 4.4 21 98 0 175 35 13 9 41 1.77
77879--77919 21 2.0 21 100 0 82 39 12 9 39 1.76
78564--78604 21 2.0 21 100 0 82 39 12 9 39 1.76
87830--87991 21 7.7 21 93 2 87 16 20 16 47 1.82
87830--87993 42 3.9 42 90 6 244 15 20 16 46 1.83
87830--87993 63 2.6 63 86 9 228 15 20 16 46 1.83
87848--87993 21 6.9 20 96 3 229 14 21 15 48 1.80
89682--89728 23 2.0 24 87 8 69 10 19 10 59 1.59
90433--90508 24 3.2 24 84 0 98 25 9 9 56 1.60
90923--90971 24 2.0 24 96 0 89 30 16 14 38 1.88
91519--91568 21 2.4 21 93 0 82 16 34 16 34 1.90
92518--92660 16 8.8 16 73 15 98 27 1 1 69 1.05
92557--92641 33 2.5 34 80 7 100 28 1 1 69 1.03
92564--92787 33 7.3 30 63 22 92 32 1 3 62 1.21
92590--92631 19 2.3 19 88 8 61 23 2 0 73 0.94
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
92530--92855 18 19.1 18 66 17 83 30 1 2 65 1.15
92544--92673 13 9.3 14 69 22 62 29 0 1 68 1.04
92725--92865 8 18.5 8 64 20 61 28 1 2 68 1.10
92727--92855 13 10.2 13 69 12 81 27 1 1 68 1.07
92716--92855 18 8.1 17 75 15 99 27 1 2 68 1.09
92699--92809 51 2.2 51 96 1 206 29 1 1 66 1.12
92781--92854 23 3.1 23 83 11 94 24 1 1 72 1.00
92530--92826 84 3.6 83 68 16 209 30 1 2 65 1.15
92804--92865 29 2.2 29 84 15 87 29 0 3 67 1.06
92779--92865 23 3.3 27 80 13 69 26 1 2 70 1.07
93451--93498 23 2.1 23 96 0 87 20 20 6 52 1.68
93712--93770 28 2.1 28 81 6 66 32 6 5 55 1.48
107277--107305 14 2.1 14 100 0 58 27 13 0 58 1.36
107830--107871 21 2.0 21 90 0 66 47 4 7 40 1.52
109042--109119 21 3.6 21 76 10 93 34 16 12 35 1.87
109063--109129 21 2.9 24 73 13 77 37 17 11 32 1.87
109039--109129 45 2.0 45 100 0 182 36 17 13 32 1.88
109290--109316 12 2.2 12 100 0 54 48 7 7 37 1.59
110934--110960 12 2.2 12 100 0 54 44 14 7 33 1.73
112310--112545 47 5.0 47 100 0 472 36 10 8 44 1.69
117126--117164 2 19.0 2 84 5 51 51 2 2 43 1.29
129766--130615 90 9.7 90 92 6 1462 26 5 16 52 1.63
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
129766--130606 172 4.8 172 94 5 1430 26 5 15 52 1.63
129797--130606 262 3.1 262 97 1 1521 26 5 15 52 1.63
131770--131837 22 3.1 22 79 8 84 23 11 11 52 1.70
132218--132255 19 2.0 19 100 0 76 42 5 5 47 1.48
132390--132421 12 2.6 12 95 5 55 53 0 0 46 1.00
132386--132423 20 1.9 20 94 0 67 52 0 0 47 1.00
135679--135705 14 1.9 14 100 0 54 14 7 11 66 1.43
143109--143157 16 3.1 15 85 11 62 42 6 8 42 1.59
143128--143174 16 2.9 16 87 6 60 48 8 4 38 1.53
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Tables: 1
The End!