NC_047416.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_047416.1 Catalpa ovata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158355
Tables: 1
This is table 1 of 1 ( 40 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6555--6580 13 2.0 13 100 0 52 46 7 0 46 1.31
8503--8535 14 2.4 14 95 5 59 18 9 12 60 1.57
15858--15894 19 1.9 19 94 0 65 37 13 8 40 1.74
30221--30246 13 2.0 13 100 0 52 38 7 15 38 1.76
31757--31804 24 2.0 24 100 0 96 41 20 4 33 1.72
31762--31813 24 2.2 24 86 6 70 46 17 3 32 1.66
42484--42516 13 2.6 13 90 4 50 33 0 15 51 1.43
42769--42821 26 2.1 25 82 10 63 60 5 3 30 1.37
46743--46774 16 2.0 16 100 0 64 25 12 25 37 1.91
51480--51507 14 2.0 14 100 0 56 14 7 7 71 1.29
58628--58671 21 2.1 21 91 0 70 31 9 31 27 1.88
59019--59078 15 4.0 15 93 0 102 33 18 11 36 1.87
60781--60826 21 2.2 21 92 0 74 32 23 13 30 1.93
68299--68335 18 2.1 18 89 0 56 5 24 0 70 1.08
68946--68981 15 2.4 15 95 0 63 58 5 13 22 1.56
69064--69104 21 2.0 21 95 0 73 29 26 9 34 1.88
80273--80319 24 2.0 24 86 0 67 29 29 14 25 1.95
85613--85662 25 2.0 25 96 0 91 40 18 12 30 1.86
86932--87066 19 7.1 19 100 0 270 42 10 5 42 1.61
89342--89389 24 2.1 22 84 7 60 12 22 10 54 1.68
89364--89431 21 3.2 21 73 8 66 11 20 8 58 1.59
91801--91872 18 4.0 18 90 0 108 27 15 23 33 1.95
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
91799--91867 36 1.9 36 93 0 120 27 13 24 34 1.92
93123--93185 21 3.0 21 100 0 126 38 9 38 14 1.78
99725--99759 17 2.0 18 94 5 63 28 0 22 48 1.51
107678--107738 31 2.0 31 93 0 104 40 21 9 27 1.85
109213--109300 24 3.8 24 94 5 148 55 7 15 20 1.65
117071--117109 20 2.0 20 85 10 53 56 23 0 20 1.42
122589--122619 15 2.1 15 100 0 62 48 0 6 45 1.28
122640--122674 17 2.1 17 100 0 70 37 11 0 51 1.38
134088--134175 24 3.8 24 94 5 148 20 15 7 55 1.65
135650--135710 31 2.0 31 93 0 104 27 9 21 40 1.85
143629--143663 17 2.0 18 94 5 63 48 22 0 28 1.51
143656--143701 23 2.0 23 86 0 65 60 6 6 26 1.46
150203--150265 21 3.0 21 100 0 126 14 38 9 38 1.78
151521--151589 18 3.8 18 92 0 120 34 24 13 27 1.92
153976--154028 21 2.5 21 79 11 63 62 11 16 9 1.54
153957--154046 24 4.1 22 72 13 69 55 10 22 12 1.66
156322--156456 19 7.1 19 100 0 270 42 5 10 42 1.61
157726--157775 25 2.0 25 96 0 91 30 12 18 40 1.86
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Tables: 1
The End!