NC_047437.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_047437.1 Houttuynia cordata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160228
Tables: 1
This is table 1 of 1 ( 25 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7529--7562 17 2.0 17 100 0 68 41 11 23 23 1.87
37426--37461 18 2.1 17 89 5 54 36 5 0 58 1.22
43958--44016 26 2.3 26 90 0 91 16 18 5 59 1.55
48883--48925 11 3.6 11 79 14 50 44 2 2 51 1.27
55318--55347 15 2.0 15 100 0 60 13 33 6 46 1.69
62150--62180 15 2.1 15 93 0 53 58 3 9 29 1.46
62297--62333 11 3.6 11 79 20 53 21 0 0 78 0.75
79323--79347 13 1.9 13 100 0 50 92 0 8 0 0.40
83286--83331 24 1.9 24 95 0 83 26 36 15 21 1.93
84526--84559 11 3.1 11 91 8 52 2 14 0 82 0.79
84605--84640 17 2.1 17 89 0 54 36 5 36 22 1.78
90709--90739 15 2.1 15 100 0 62 19 32 0 48 1.49
92981--93066 24 3.7 24 84 9 133 13 24 11 50 1.75
92981--93072 45 2.1 45 93 2 159 13 23 10 52 1.71
95460--95538 9 9.4 9 68 15 53 32 8 26 31 1.87
95445--95521 24 3.2 24 94 0 136 32 9 25 32 1.87
95498--95546 18 2.7 18 100 0 98 32 6 26 34 1.81
118420--118460 21 2.0 21 85 9 57 46 17 14 21 1.84
120871--120901 11 2.8 11 95 0 53 45 16 0 38 1.47
152869--152947 9 9.4 9 68 15 53 31 26 8 32 1.87
152886--152962 24 3.2 24 94 0 136 32 25 9 32 1.87
152861--152909 18 2.7 18 100 0 98 34 26 6 32 1.81
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
155341--155426 24 3.7 24 84 9 133 50 11 24 13 1.75
155335--155426 45 2.1 44 93 2 157 52 10 23 13 1.71
157668--157698 15 2.1 15 100 0 62 48 0 32 19 1.49
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Tables: 1
The End!