NC_047469.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_047469.1 Bacopa monnieri chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152495
Tables: 1
This is table 1 of 1 ( 34 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
11659--11696 13 3.0 13 88 3 60 52 18 5 23 1.65
11965--12128 80 2.0 80 100 0 328 25 25 17 31 1.97
13958--13989 16 2.0 16 93 0 55 34 12 15 37 1.85
26508--26544 15 2.5 15 91 4 58 40 8 10 40 1.70
26647--26673 13 2.1 13 100 0 54 22 14 7 55 1.64
39521--39549 15 1.9 15 100 0 58 17 34 34 13 1.89
41589--41620 13 2.5 13 95 5 57 56 0 12 31 1.37
47389--47420 16 2.0 16 93 0 55 53 9 6 31 1.58
51497--51539 18 2.6 16 80 16 52 25 6 13 53 1.65
54177--54207 14 2.2 14 100 0 62 16 19 12 51 1.76
58733--58775 17 2.6 17 85 3 52 48 11 2 37 1.52
66820--66844 9 2.8 9 100 0 50 0 20 0 80 0.72
67790--67830 21 2.0 21 90 0 64 29 24 9 36 1.87
75980--76021 13 3.3 13 81 15 52 57 0 19 23 1.41
77495--77537 21 2.0 21 100 0 86 44 9 0 46 1.35
88564--88618 24 2.5 22 85 8 67 14 23 12 49 1.78
88586--88653 21 3.2 21 77 8 75 11 22 8 57 1.61
90980--91055 9 8.4 9 73 0 62 32 6 26 34 1.82
90967--91056 18 5.2 18 89 4 123 32 6 24 36 1.81
98787--98835 24 2.1 23 92 3 80 28 4 10 57 1.50
98793--98855 10 5.5 11 75 21 51 31 1 15 50 1.54
98828--98862 17 2.0 18 94 5 63 28 0 22 48 1.51
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
106753--106813 31 2.0 31 93 0 104 40 21 9 27 1.85
112049--112081 16 2.1 16 94 0 57 39 9 12 39 1.74
122284--122343 32 1.9 31 89 3 93 41 1 15 41 1.56
122284--122354 32 2.3 31 82 2 79 39 1 16 42 1.57
125514--125564 14 3.6 14 78 7 50 0 21 5 72 1.05
125514--125573 30 2.1 30 81 9 72 3 20 5 71 1.19
129448--129508 31 2.0 31 93 0 104 27 9 21 40 1.85
137399--137433 17 2.0 18 94 5 63 48 22 0 28 1.51
137426--137474 24 2.1 23 92 3 80 57 10 4 28 1.50
145205--145282 18 4.3 18 91 0 120 34 25 7 32 1.84
145218--145281 9 7.1 9 74 0 65 35 26 4 32 1.77
147608--147697 21 4.1 22 75 8 76 54 10 23 12 1.67
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Tables: 1
The End!