NC_047471.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_047471.1 Hemidesmus indicus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155913
Tables: 1
This is table 1 of 1 ( 75 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1269--1310 21 2.0 21 100 0 84 47 23 4 23 1.70
5923--5966 2 24.0 2 78 17 51 47 2 0 50 1.13
6059--6095 18 2.1 18 100 0 74 37 0 16 45 1.47
6367--6396 13 2.2 14 94 5 53 43 13 6 36 1.70
6611--6637 13 2.1 13 100 0 54 48 14 0 37 1.45
6944--6993 22 2.3 22 82 3 75 44 0 0 56 0.99
6916--6980 30 2.2 28 86 5 85 36 0 0 63 0.95
6975--7000 13 2.0 13 100 0 52 53 0 0 46 1.00
6927--6992 30 2.2 30 78 5 71 43 0 0 56 0.99
8602--8654 28 2.0 28 88 7 83 39 0 1 58 1.09
13386--13415 15 2.0 15 93 0 51 50 3 6 40 1.45
14231--14268 19 2.0 19 100 0 76 36 26 21 15 1.93
15318--15356 19 2.1 19 95 0 69 48 15 2 33 1.58
27492--27546 27 2.0 27 92 0 92 36 12 20 30 1.90
27741--27782 19 2.2 19 100 0 84 50 0 9 40 1.35
35286--35324 12 3.1 12 86 13 60 33 0 15 51 1.44
35286--35326 14 3.1 14 93 6 68 34 0 14 51 1.43
35349--35407 3 19.3 3 73 16 50 71 0 1 27 0.96
35349--35389 7 6.0 7 81 16 50 73 0 0 26 0.84
35349--35407 27 2.3 25 91 5 91 71 0 1 27 0.96
35349--35407 18 3.4 18 72 27 56 71 0 1 27 0.96
45195--45219 11 2.3 11 100 0 50 68 0 16 16 1.22
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
46129--46180 11 4.8 11 84 13 56 36 0 0 63 0.95
46128--46233 2 57.0 2 71 20 70 44 0 1 53 1.11
46163--46233 7 10.1 7 77 17 58 49 0 2 47 1.16
46225--46265 6 7.2 6 86 8 59 46 0 19 34 1.50
46225--46264 11 3.5 11 93 6 71 45 0 20 35 1.51
47236--47274 12 3.1 12 85 10 51 53 10 5 30 1.56
47240--47281 14 3.2 13 87 9 59 57 9 2 30 1.44
54058--54119 15 4.3 15 74 15 67 33 1 8 56 1.38
55967--55991 12 2.1 12 100 0 50 16 24 0 60 1.36
56110--56160 23 2.3 23 96 3 95 52 21 0 25 1.47
56580--56619 16 2.6 16 88 7 57 27 25 0 47 1.52
56572--56618 23 2.0 23 100 0 94 25 25 0 48 1.51
56574--56627 23 2.3 23 90 6 83 31 20 0 48 1.50
58698--58759 16 3.8 16 72 16 56 40 0 0 59 0.97
58774--58801 14 2.0 14 100 0 56 28 14 0 57 1.38
58774--58859 46 1.9 43 86 6 118 40 9 0 50 1.35
58881--58912 14 2.3 14 100 0 64 43 0 12 43 1.42
59167--59199 16 2.1 16 100 0 66 33 6 18 42 1.75
60416--60447 16 2.0 16 93 0 55 25 15 12 46 1.81
61919--61968 24 2.1 24 100 0 100 24 24 16 36 1.94
63439--63464 13 2.0 13 100 0 52 38 0 7 53 1.30
66699--66725 13 2.1 13 100 0 54 37 0 22 40 1.54
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
68294--68368 33 2.3 32 84 9 89 56 1 4 38 1.27
68310--68413 20 5.1 20 69 20 63 56 3 1 37 1.28
68325--68378 26 2.1 26 86 13 76 55 0 0 44 0.99
68325--68374 15 3.0 17 75 18 52 56 0 0 44 0.99
68381--68423 22 1.9 23 85 4 61 58 11 0 30 1.34
71213--71259 24 1.9 25 86 4 69 31 10 2 55 1.46
77629--77690 19 3.2 20 80 15 60 46 1 3 48 1.28
79907--79952 24 1.9 24 95 0 83 26 32 13 28 1.93
80859--80904 23 2.0 23 83 8 58 45 0 2 52 1.13
89446--89528 21 3.8 21 91 4 121 14 27 10 46 1.78
89467--89535 21 3.3 21 95 0 120 13 31 8 46 1.73
91873--91929 24 2.4 24 100 0 114 33 8 24 33 1.86
94983--95015 16 2.1 16 94 0 57 60 6 9 24 1.49
99671--99717 23 2.0 25 84 16 64 8 6 6 78 1.08
113466--113491 12 2.2 12 100 0 52 15 7 0 76 0.99
118254--118290 14 2.6 14 95 0 65 32 13 10 43 1.79
118286--118326 13 3.0 13 80 13 55 73 0 0 26 0.84
118287--118323 15 2.5 15 90 0 56 72 0 0 27 0.84
118334--118418 20 4.1 21 76 13 77 37 2 0 60 1.10
118340--118430 5 18.2 5 67 24 50 39 1 0 59 1.05
118340--118426 7 13.0 7 79 13 103 39 1 0 59 1.05
118360--118441 29 2.9 29 83 10 107 45 0 0 54 0.99
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
118349--118431 24 3.5 24 77 9 80 40 1 0 57 1.06
118412--118467 11 5.0 11 82 8 60 58 0 1 39 1.08
118426--118467 23 1.9 23 90 9 70 61 0 2 35 1.09
118396--118472 13 6.4 12 82 11 54 55 0 1 42 1.07
140352--140398 23 2.0 25 84 16 64 78 6 6 8 1.08
145054--145086 16 2.1 16 94 0 57 24 9 6 60 1.49
148140--148196 24 2.4 24 100 0 114 33 24 8 33 1.86
150534--150602 21 3.3 21 95 0 120 46 8 31 13 1.73
150541--150623 21 3.8 21 91 4 121 46 10 27 14 1.78
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Tables: 1
The End!