NC_047475.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_047475.1 Mentha x piperita chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152048
Tables: 1
This is table 1 of 1 ( 33 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6188--6236 10 4.6 10 78 14 53 40 0 10 48 1.37
6188--6216 11 2.7 11 94 5 51 37 0 10 51 1.36
8311--8335 13 1.9 13 100 0 50 0 28 0 72 0.86
30425--30462 19 2.0 19 100 0 76 31 15 10 42 1.81
39702--39730 15 1.9 15 100 0 58 17 34 34 13 1.89
41569--41603 17 2.1 18 89 10 56 42 0 5 51 1.25
45938--45989 14 3.6 15 82 14 65 51 0 0 48 1.00
45941--45999 7 9.1 7 74 22 58 55 0 0 44 0.99
47822--47864 21 2.0 23 86 9 63 25 11 0 62 1.29
58526--58557 16 2.0 16 93 0 55 25 21 15 37 1.93
58834--58876 17 2.6 16 88 3 59 53 6 2 37 1.41
87944--87998 24 2.5 22 85 8 67 14 23 12 49 1.78
87966--88033 21 3.2 21 77 8 75 11 22 10 55 1.65
90341--90430 18 5.2 18 94 4 141 31 7 25 35 1.84
90353--90429 9 8.6 9 72 0 64 31 9 27 32 1.88
98136--98176 11 3.8 11 93 3 66 31 4 14 48 1.65
98117--98176 22 2.7 21 84 7 66 30 5 11 53 1.58
98136--98203 17 4.1 16 73 17 59 30 2 19 47 1.64
103049--103074 13 2.0 13 100 0 52 46 0 0 53 1.00
106146--106206 31 2.0 31 93 0 104 40 21 9 27 1.85
115211--115245 18 1.9 18 88 0 52 40 11 14 34 1.82
125125--125176 14 3.9 14 82 5 63 0 15 5 78 0.92
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
125123--125158 18 2.1 17 89 5 54 0 16 2 80 0.83
125122--125176 27 2.0 27 86 6 76 0 14 5 80 0.89
129022--129082 31 2.0 31 93 0 104 27 9 21 40 1.85
132154--132179 13 2.0 13 100 0 52 53 0 0 46 1.00
137025--137059 17 2.0 18 94 5 63 48 22 0 28 1.51
137052--137092 11 3.8 11 93 3 66 48 14 4 31 1.65
137074--137119 23 2.0 23 86 0 65 60 6 6 26 1.46
144811--144874 9 7.1 9 74 0 65 34 28 6 31 1.82
144798--144887 18 5.2 18 94 4 141 35 25 7 31 1.84
147213--147266 21 2.6 21 82 11 74 59 11 20 9 1.59
147195--147284 21 4.1 22 75 8 67 53 11 23 12 1.70
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Tables: 1
The End!