NC_047477.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_047477.1 Phyllanthus emblica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156208
Tables: 1
This is table 1 of 1 ( 29 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1969--2001 15 2.2 15 100 0 66 33 6 0 60 1.21
6518--6555 19 2.0 19 100 0 76 36 21 5 36 1.76
7308--7343 17 2.1 17 100 0 72 22 5 16 55 1.62
9493--9525 12 2.8 12 90 9 50 45 18 0 36 1.49
9508--9544 16 2.3 16 95 0 65 54 8 0 37 1.30
10750--10815 31 2.1 31 85 0 87 46 7 4 40 1.52
31286--31311 12 2.2 12 100 0 52 42 15 15 26 1.87
31873--31910 19 2.0 19 89 0 58 42 5 15 36 1.70
33738--33774 18 2.1 18 100 0 74 62 0 16 21 1.33
38127--38175 20 2.4 21 86 13 75 59 0 0 40 0.98
44339--44382 23 2.0 22 82 13 54 75 2 2 20 1.03
47674--47708 9 3.8 9 85 7 52 57 2 11 28 1.48
47671--47708 19 2.0 19 100 0 76 57 5 10 26 1.53
53994--54050 17 3.4 17 92 0 87 33 15 14 36 1.88
56348--56384 18 2.1 18 100 0 74 29 5 16 48 1.68
58153--58202 25 2.0 25 100 0 100 40 12 20 28 1.87
65308--65358 26 2.0 25 88 3 75 31 7 17 43 1.78
73096--73125 14 2.1 14 93 0 51 23 13 6 56 1.60
73576--73634 23 2.4 25 83 5 77 44 3 0 52 1.17
75533--75571 18 2.1 18 86 13 53 10 15 12 61 1.56
75533--75570 17 2.2 18 85 4 51 10 15 13 60 1.59
78647--78685 17 2.3 17 86 0 60 43 7 20 28 1.79
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
80943--80991 24 2.0 24 88 0 71 28 22 16 32 1.95
90698--90765 21 3.2 21 82 0 82 11 22 7 58 1.57
93115--93171 18 3.2 17 87 5 78 28 7 29 35 1.83
122216--122242 13 2.1 13 100 0 54 33 22 0 44 1.53
125164--125192 14 2.1 14 100 0 58 34 20 6 37 1.80
148712--148768 18 3.2 18 87 5 80 35 29 7 28 1.83
151119--151207 21 4.1 21 81 5 81 56 7 23 12 1.62
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!