NC_047478.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_047478.1 Boerhavia diffusa chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154015
Tables: 1
This is table 1 of 1 ( 98 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1716--1748 17 1.9 17 93 0 57 42 9 3 45 1.51
4285--4315 11 2.8 11 95 0 53 61 9 3 25 1.42
5976--6057 12 7.2 13 71 27 62 26 4 8 59 1.47
5989--6059 37 2.1 33 87 12 99 25 4 8 61 1.42
6330--6441 24 4.9 23 71 18 81 64 3 9 22 1.39
6317--6402 43 2.0 43 100 0 172 60 2 6 30 1.35
6764--6793 14 2.1 14 100 0 60 43 6 0 50 1.28
6791--6824 14 2.4 14 95 0 59 47 0 5 47 1.26
6753--6809 25 2.3 25 81 6 71 45 3 1 49 1.29
7068--7116 24 2.0 24 100 0 98 32 16 8 42 1.77
7591--7636 23 2.0 23 91 0 74 41 17 8 32 1.80
7750--7786 14 2.8 14 88 8 51 40 0 16 43 1.48
8122--8172 14 3.7 14 81 5 68 43 11 0 45 1.40
8139--8207 11 6.2 11 77 14 70 46 8 0 44 1.34
8165--8211 22 2.1 22 100 0 94 44 8 0 46 1.33
8769--8793 13 1.9 13 100 0 50 48 0 4 48 1.20
10170--10211 21 2.0 21 100 0 84 47 4 14 33 1.65
11877--11909 16 2.0 17 94 5 59 33 24 0 42 1.55
11865--11934 11 6.7 11 68 28 55 30 27 0 42 1.56
11871--11934 25 2.5 25 83 11 85 28 26 0 45 1.54
11906--11934 14 2.1 14 100 0 58 20 37 0 41 1.53
12539--12564 13 2.0 13 100 0 52 69 7 7 15 1.35
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
12723--12766 12 3.8 12 88 8 56 45 0 20 34 1.51
12730--12766 12 2.9 13 88 8 58 48 0 21 29 1.50
12745--12787 22 1.9 23 90 4 70 51 2 16 30 1.57
12730--12787 12 4.9 12 77 12 57 50 1 18 29 1.57
12750--12801 23 2.3 22 83 6 59 57 3 17 21 1.55
14481--14516 15 2.5 15 95 4 65 41 25 0 33 1.55
18066--18093 12 2.3 12 100 0 56 39 0 17 42 1.50
27405--27432 14 2.0 14 100 0 56 50 7 0 42 1.30
29047--29075 14 2.1 14 100 0 58 58 20 0 20 1.39
29751--29776 13 2.0 13 100 0 52 38 7 0 53 1.30
31184--31252 10 6.5 10 73 21 52 42 2 1 53 1.24
32016--32046 16 2.0 15 93 6 53 54 0 6 38 1.26
32132--32178 12 3.8 12 86 5 58 40 6 10 42 1.65
32132--32168 13 2.9 13 92 4 58 40 8 5 45 1.56
32747--32780 17 2.0 17 100 0 68 70 0 0 29 0.87
33088--33122 17 2.1 17 100 0 70 42 0 11 45 1.40
36745--36778 17 2.0 17 100 0 68 52 0 11 35 1.38
37134--37176 19 2.3 19 95 0 77 30 6 11 51 1.65
42692--42736 16 2.9 16 90 3 65 53 6 2 37 1.40
42922--43038 11 10.2 11 72 22 66 35 0 0 64 0.93
42919--42969 19 2.6 19 96 3 93 27 0 0 72 0.85
42923--42963 6 6.8 6 79 20 50 26 0 0 73 0.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
42923--43023 53 1.9 53 88 8 152 35 0 0 64 0.94
42991--43081 3 30.3 3 79 16 100 38 0 2 59 1.10
42983--43118 21 6.6 21 86 9 165 38 0 2 58 1.16
43086--43122 19 2.0 18 94 5 65 51 0 0 48 1.00
43090--43123 17 2.0 17 94 0 59 50 0 0 50 1.00
43827--43862 18 2.0 18 88 0 54 30 13 8 47 1.73
45684--45713 14 2.1 14 100 0 60 36 26 0 36 1.57
48266--48301 12 3.2 12 81 18 51 5 11 0 83 0.80
56083--56158 25 3.0 25 100 0 152 25 3 7 63 1.39
58216--58244 13 2.3 13 94 5 51 41 0 0 58 0.98
59069--59121 13 4.0 13 97 2 97 30 7 7 54 1.56
62177--62219 19 2.3 19 91 0 68 44 11 6 37 1.68
65387--65421 18 1.9 18 88 0 52 42 17 11 28 1.83
66643--66678 17 2.1 17 100 0 72 19 22 5 52 1.66
66875--66915 20 2.0 20 100 0 82 48 0 12 39 1.41
67846--67885 20 2.0 20 100 0 80 55 0 5 40 1.22
68298--68340 22 2.2 19 84 16 52 23 4 0 72 1.04
68760--68790 15 2.1 15 100 0 62 67 0 0 32 0.91
69988--70032 15 2.9 15 76 3 54 66 0 0 33 0.92
69997--70040 19 2.2 21 84 8 56 63 0 2 34 1.07
71814--71874 10 6.4 9 76 23 63 62 1 4 31 1.26
71833--71874 18 2.3 19 95 4 77 61 0 4 33 1.17
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
77163--77197 16 2.2 16 100 0 70 28 0 0 71 0.86
77219--77250 16 2.0 16 100 0 64 31 6 0 62 1.20
77241--77278 18 2.1 18 100 0 76 31 0 0 68 0.90
77245--77286 18 2.3 18 91 0 66 38 0 2 59 1.10
77223--77279 16 3.4 16 84 13 71 33 1 0 64 1.04
78173--78204 16 2.0 16 93 0 55 34 9 0 56 1.32
81026--81069 12 3.9 11 80 14 54 25 4 0 70 1.06
80994--81065 15 4.5 15 75 21 58 27 5 0 66 1.13
81043--81102 13 4.5 13 82 14 61 26 10 0 63 1.26
81053--81117 26 2.5 26 81 18 82 32 7 0 60 1.25
84376--84411 17 2.1 17 100 0 72 30 11 0 58 1.33
84413--84437 12 2.1 12 100 0 50 56 0 8 36 1.29
88529--88594 21 3.0 21 84 8 80 13 25 9 51 1.70
90893--90954 18 3.5 17 78 6 61 32 12 17 37 1.88
93872--93920 24 2.0 24 100 0 98 55 12 0 32 1.37
98717--98750 17 2.0 17 100 0 68 35 0 5 58 1.22
106976--107037 32 1.9 32 86 0 88 37 20 12 29 1.90
107426--107459 17 2.0 17 100 0 68 52 5 23 17 1.66
112600--112632 16 2.1 16 100 0 66 48 18 6 27 1.71
112647--112686 16 2.6 16 96 4 73 45 5 0 50 1.23
113867--113946 33 2.4 34 83 6 94 58 2 6 32 1.36
117446--117482 18 2.1 18 94 0 65 48 0 5 45 1.25
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
117833--117870 19 2.0 19 100 0 76 63 5 15 15 1.48
130257--130290 17 2.0 17 100 0 68 17 23 5 52 1.66
130679--130740 32 1.9 32 86 0 88 29 12 20 37 1.90
138966--138999 17 2.0 17 100 0 68 58 5 0 35 1.22
143796--143844 24 2.0 24 100 0 98 32 0 12 55 1.37
146767--146823 18 3.2 18 77 5 62 38 17 10 33 1.84
149122--149187 21 3.0 21 84 8 80 51 9 25 13 1.70
153243--153287 12 3.1 15 70 23 51 55 13 2 28 1.50
153279--153303 12 2.1 12 100 0 50 36 8 0 56 1.29
153305--153340 17 2.1 17 100 0 72 58 0 11 30 1.33
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Tables: 1
The End!