NC_048478.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_048478.1 Barleria prionitis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152217
Tables: 1
This is table 1 of 1 ( 40 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
86--124 12 3.5 12 80 20 57 41 0 5 53 1.23
83--124 21 2.0 21 100 0 84 38 0 4 57 1.20
245--290 23 2.0 23 95 0 83 47 15 6 30 1.70
346--400 26 2.1 26 100 0 110 50 14 7 27 1.69
3215--3244 15 2.0 15 100 0 60 13 26 6 53 1.64
13809--13836 12 2.3 12 100 0 56 46 14 7 32 1.71
15052--15077 13 2.0 13 100 0 52 61 7 15 15 1.55
26528--26555 13 2.2 13 100 0 56 46 0 7 46 1.30
26784--26811 12 2.3 12 100 0 56 21 0 32 46 1.52
27960--27987 14 2.0 14 100 0 56 21 21 0 57 1.41
29440--29465 13 2.0 13 100 0 52 38 7 15 38 1.76
42499--42560 30 2.1 30 100 0 124 40 3 16 40 1.64
43030--43063 16 2.1 16 89 10 52 2 14 2 79 0.97
45804--45836 16 2.1 16 100 0 66 42 0 6 51 1.26
45827--45894 16 3.8 18 85 14 72 39 4 13 42 1.64
45852--45927 16 4.7 16 80 3 98 44 3 14 36 1.64
45829--45889 10 6.7 10 71 17 53 37 4 13 44 1.65
45871--45937 33 2.0 33 100 0 134 47 2 16 32 1.62
45883--45955 33 2.2 33 85 0 92 49 2 13 34 1.57
57116--57155 20 2.0 20 100 0 80 25 10 15 50 1.74
58664--58693 15 2.0 15 100 0 60 40 20 6 33 1.78
58986--59011 13 2.0 13 100 0 52 69 7 0 23 1.14
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
59544--59587 21 2.1 21 100 0 88 31 22 13 31 1.93
66921--66958 17 2.2 17 90 0 58 5 23 0 71 1.07
67539--67568 14 2.1 14 93 0 51 33 16 13 36 1.88
67597--67643 21 2.3 20 82 10 51 53 8 14 23 1.69
67721--67761 21 2.0 21 90 0 64 29 24 9 36 1.87
70996--71040 22 2.0 22 100 0 90 24 17 13 44 1.85
82903--82932 15 2.0 15 100 0 60 33 26 0 40 1.57
88522--88589 21 3.3 21 76 10 68 11 22 7 58 1.57
90911--90950 18 2.2 18 100 0 80 30 10 25 35 1.88
98758--98794 17 2.2 16 86 13 56 29 0 24 45 1.53
106719--106779 31 2.0 31 93 0 104 40 21 9 27 1.85
111593--111633 19 2.2 20 82 8 50 26 9 2 60 1.40
112067--112095 13 2.1 14 93 6 51 58 0 3 37 1.15
122198--122248 25 2.0 25 100 0 102 45 0 23 31 1.53
129175--129235 31 2.0 31 93 0 104 27 9 21 40 1.85
137160--137194 17 2.0 18 94 5 63 48 22 0 28 1.51
145004--145043 18 2.2 18 100 0 80 35 25 10 30 1.88
147383--147436 21 2.6 21 80 11 65 61 9 20 9 1.54
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Tables: 1
The End!