NC_048518.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_048518.1 Thespesia populnea chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160451
Tables: 1
This is table 1 of 1 ( 71 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5522--5555 15 2.3 15 94 0 59 38 0 23 38 1.55
6555--6594 19 2.1 19 90 0 62 30 15 2 52 1.55
8362--8402 21 2.0 21 90 0 64 36 12 7 43 1.70
8410--8449 21 1.9 21 89 0 62 30 12 0 57 1.36
8431--8496 33 2.0 33 100 0 132 45 9 0 45 1.35
10191--10236 15 3.1 14 87 9 56 43 4 6 45 1.49
10198--10242 14 2.9 16 84 15 60 40 6 4 48 1.49
10241--10283 12 3.4 12 81 12 50 37 9 2 51 1.47
10233--10292 26 2.3 26 77 11 61 41 6 1 50 1.39
33050--33100 24 2.1 24 89 7 77 25 0 23 50 1.49
38129--38157 11 2.5 12 94 5 51 62 0 0 37 0.96
38153--38247 3 32.3 3 72 23 69 63 0 4 32 1.14
38142--38208 19 3.4 19 80 14 73 61 0 1 37 1.05
38107--38179 29 2.5 29 84 6 94 61 1 1 35 1.13
38142--38223 41 2.1 37 86 8 110 60 0 2 36 1.10
38153--38247 15 6.9 14 81 13 92 63 0 4 32 1.14
38153--38257 41 2.7 39 77 20 105 62 0 4 32 1.16
38074--38316 17 15.9 15 67 20 80 59 2 3 34 1.25
38154--38312 20 7.5 20 68 21 62 59 1 4 34 1.25
38271--38323 14 3.9 14 78 12 65 58 0 0 41 0.98
44006--44036 15 2.1 15 100 0 62 19 12 0 67 1.22
44696--44742 21 2.2 22 88 11 71 55 0 14 29 1.40
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
45634--45695 16 4.0 15 74 13 54 20 9 11 58 1.61
45652--45702 16 3.2 16 97 0 93 21 11 13 52 1.72
46680--46722 17 2.6 17 88 3 70 69 0 9 20 1.15
48333--48408 11 7.0 11 74 14 59 67 0 3 28 1.09
48317--48466 28 5.1 27 74 18 115 64 0 5 30 1.15
48349--48381 13 2.5 13 100 0 66 72 0 0 27 0.85
48322--48410 9 8.5 11 72 20 68 66 0 3 30 1.08
49970--50012 18 2.4 18 88 0 59 69 6 13 9 1.35
50877--50917 10 4.0 10 93 3 64 34 0 17 48 1.47
53839--53870 15 2.0 17 88 11 50 34 3 12 50 1.56
54015--54045 14 2.2 14 100 0 62 22 12 0 64 1.27
54049--54105 22 2.7 22 86 10 75 45 1 1 50 1.22
58407--58566 8 19.2 8 66 25 50 32 4 1 61 1.27
58416--58506 16 5.9 16 74 17 70 38 3 2 56 1.28
58405--58515 46 2.4 47 80 8 140 36 2 1 58 1.23
58505--58586 39 2.1 39 95 0 146 23 8 1 67 1.26
58523--58592 15 5.1 15 73 19 55 21 10 1 67 1.28
63128--63161 17 2.0 17 100 0 68 35 5 11 47 1.65
70318--70365 24 2.0 24 92 8 80 27 12 8 52 1.67
70385--70419 17 2.0 18 88 5 54 42 0 2 54 1.15
72162--72297 4 32.2 4 69 15 78 36 2 0 61 1.08
72163--72298 22 6.4 21 84 11 147 36 2 0 61 1.09
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
72195--72294 9 10.9 9 72 19 73 40 1 0 59 1.04
72426--72464 21 1.9 21 94 5 71 30 25 10 33 1.89
86519--86552 16 2.0 18 88 11 54 64 8 8 17 1.47
86777--86803 7 3.9 7 100 0 54 55 0 0 44 0.99
87337--87362 13 2.0 13 100 0 52 30 15 7 46 1.74
88665--88696 10 3.2 10 100 0 64 40 0 0 59 0.97
89611--89639 14 2.1 14 100 0 58 27 13 6 51 1.66
93806--93874 21 3.3 21 87 2 95 11 24 8 55 1.64
96234--96327 18 5.4 18 92 3 131 28 9 25 36 1.87
104581--104608 14 2.0 14 100 0 56 14 14 0 71 1.15
104605--104655 6 9.2 6 83 12 56 31 3 13 50 1.60
104605--104655 11 4.6 12 72 18 56 31 3 13 50 1.60
104597--104652 27 2.1 27 100 0 112 28 7 10 53 1.62
112818--112879 32 1.9 32 96 0 115 38 22 9 29 1.86
114642--114666 13 1.9 13 100 0 50 32 0 0 68 0.90
114766--114807 21 2.0 21 81 9 50 69 4 2 23 1.20
119085--119130 24 2.0 24 88 12 71 63 6 13 17 1.50
119259--119302 21 2.1 21 83 8 54 63 2 9 25 1.35
136554--136615 32 1.9 32 96 0 115 29 9 22 38 1.86
144781--144836 27 2.1 27 100 0 112 53 10 7 28 1.62
144778--144828 6 9.2 6 83 12 56 50 13 3 31 1.60
144825--144852 14 2.0 14 100 0 56 71 0 14 14 1.15
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
153106--153199 18 5.4 18 92 3 131 36 25 9 28 1.87
153106--153186 9 9.0 9 70 0 54 34 27 9 28 1.89
155559--155647 21 4.1 21 84 5 90 53 10 23 12 1.68
155559--155627 21 3.3 21 87 2 95 55 8 24 11 1.64
159794--159822 14 2.1 14 100 0 58 51 6 13 27 1.66
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Tables: 1
The End!