NC_048954.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_048954.1 Litsea cubeba chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  152725

    Tables:   1   

    This is table  1  of  1  ( 20 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  3902--3926                         12       2.1      12          100       0         50      60   8    16   16   1.58

  29696--29721                       13       2.0      13          100       0         52      46   15   15   23   1.83

  31952--31991                       20       2.0      20          85        9         55      52   7    0    40   1.30

  31958--31987                       15       2.0      15          100       0         60      53   6    0    40   1.27

  33543--33581                       15       2.5      15          91        4         60      43   12   5    38   1.65

  34946--34978                       17       1.9      17          93        0         57      57   0    30   12   1.35

  48535--48566                       13       2.4      13          94        5         55      59   12   18   9    1.59

  50659--50694                       18       2.0      18          100       0         72      11   50   0    38   1.38

  71637--71681                       21       2.1      21          87        0         63      33   26   11   28   1.91

  92553--92637                       21       4.0      21          83        6         91      14   29   8    48   1.72

  94207--94250                       21       2.1      21          83        8         54      31   15   25   27   1.96

  95000--95056                       24       2.4      24          100       0         114     33   8    24   33   1.86

  102058--102091                     4        8.8      4           87        6         52      17   0    0    82   0.67

  102062--102092                     15       2.1      15          93        0         53      16   0    0    83   0.64

  112144--112183                     19       2.1      19          100       0         80      32   35   0    32   1.58

  132624--132677                     18       3.0      18          97        0         99      11   14   11   62   1.53

  134216--134255                     19       2.1      19          100       0         80      32   0    35   32   1.58

  144308--144341                     4        8.8      4           87        6         52      82   0    0    17   0.67

  144307--144337                     15       2.1      15          93        0         53      83   0    0    16   0.64

  151343--151399                     24       2.4      24          100       0         114     33   24   8    33   1.86
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!